Wall clock time and date at job start Sun Mar 29 2020 21:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34674 * 126.59130 * 2 1 4 4 N 1.34124 * 108.01874 * 180.02562 * 3 2 1 5 5 C 1.30493 * 109.25800 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.65156 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.47105 * 275.02933 * 6 5 4 8 8 C 1.46906 * 110.99716 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.46825 * 35.00670 * 8 7 6 10 10 C 1.52997 * 109.47302 * 274.99847 * 8 7 6 11 11 C 1.50699 * 109.46750 * 155.00018 * 8 7 6 12 12 H 1.08003 * 119.99962 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00270 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99500 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00390 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46921 * 60.00425 * 15 13 11 17 17 H 1.48496 * 109.46933 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46946 * 300.00108 * 15 13 11 19 19 N 1.35045 * 108.70024 * 0.26699 * 5 4 3 20 20 H 0.96999 * 126.39408 * 179.74152 * 19 5 4 21 21 H 1.09006 * 109.47219 * 89.96852 * 1 2 3 22 22 H 1.08996 * 109.47504 * 209.97450 * 1 2 3 23 23 H 1.09004 * 109.47182 * 329.97351 * 1 2 3 24 24 H 1.07995 * 125.98834 * 0.05169 * 3 2 1 25 25 H 1.08996 * 109.47653 * 155.02930 * 6 5 4 26 26 H 1.09007 * 109.47191 * 35.02783 * 6 5 4 27 27 H 1.00900 * 110.99849 * 56.04996 * 7 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 29 29 H 1.09001 * 109.46832 * 60.00356 * 10 8 7 30 30 H 1.09004 * 109.47261 * 300.00337 * 10 8 7 31 31 H 0.97002 * 119.99804 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 -0.0006 5 6 3.5968 -0.6507 -0.0015 6 6 4.8317 -1.5144 -0.0029 7 7 5.3017 -1.6946 -1.3830 8 6 6.5074 -2.5328 -1.4233 9 1 6.4459 -3.2952 -0.6468 10 6 7.7425 -1.6615 -1.1861 11 6 6.6126 -3.1969 -2.7720 12 1 5.8594 -3.0141 -3.5241 13 6 7.6710 -4.0369 -3.0462 14 7 8.5884 -4.2590 -2.1305 15 14 7.8010 -4.8606 -4.7178 16 1 7.8837 -3.8222 -5.7762 17 1 9.0199 -5.7078 -4.7586 18 1 6.6025 -5.7069 -4.9471 19 7 2.3229 -1.0990 -0.0075 20 1 2.0392 -2.0265 -0.0129 21 1 -0.3634 0.0006 -1.0277 22 1 -0.3634 -0.8902 0.5134 23 1 -0.3634 0.8898 0.5143 24 1 1.9865 2.1117 0.0008 25 1 4.5960 -2.4863 0.4304 26 1 5.6122 -1.0334 0.5868 27 1 5.4657 -0.8041 -1.8283 28 1 8.6372 -2.2835 -1.2165 29 1 7.6664 -1.1813 -0.2106 30 1 7.8039 -0.8991 -1.9627 31 1 9.3333 -4.8497 -2.3235 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461723424.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:07 Heat of formation + Delta-G solvation = 47.350902 kcal Electronic energy + Delta-G solvation = -13327.571837 eV Core-core repulsion = 11030.509247 eV Total energy + Delta-G solvation = -2297.062590 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.81387 -36.06393 -32.94772 -32.42878 -31.42616 -29.10430 -26.32088 -25.12863 -23.84244 -20.88637 -20.31635 -20.03534 -17.30100 -16.12869 -15.25746 -14.72661 -14.31675 -13.87603 -13.71723 -13.32277 -12.81908 -12.71643 -12.58270 -12.19248 -11.63013 -11.48088 -10.90811 -10.80329 -10.52742 -10.13374 -9.94096 -9.75191 -9.72727 -9.04256 -8.36209 -8.03293 -7.29396 -5.98690 -4.02256 2.22360 3.30069 3.34712 3.38051 3.38621 3.42519 4.44320 4.75739 5.02628 5.08915 5.32748 5.43806 5.48666 5.50179 5.67504 5.74890 6.06186 6.15299 6.45613 6.71275 6.88464 6.97327 7.09483 7.31955 7.59792 7.75900 7.86644 8.24222 8.35723 8.49999 8.57600 9.04200 9.62926 11.08219 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053114 B = 0.006343 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.038143 B = 4413.305505 C = 4716.686267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.042 4.042 3 C -0.028 4.028 4 N -0.493 5.493 5 C 0.234 3.766 6 C 0.139 3.861 7 N -0.680 5.680 8 C 0.212 3.788 9 H 0.034 0.966 10 C -0.170 4.170 11 C -0.496 4.496 12 H 0.061 0.939 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.899 3.101 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.278 1.278 19 N -0.556 5.556 20 H 0.418 0.582 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.164 0.836 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.335 0.665 28 H 0.089 0.911 29 H 0.008 0.992 30 H 0.029 0.971 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.448 5.426 4.956 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.158 4.158 3 C -0.177 4.177 4 N -0.213 5.213 5 C -0.031 4.031 6 C 0.007 3.993 7 N -0.312 5.312 8 C 0.105 3.895 9 H 0.052 0.948 10 C -0.229 4.229 11 C -0.535 4.535 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.204 1.204 19 N -0.159 5.159 20 H 0.255 0.745 21 H 0.088 0.912 22 H 0.080 0.920 23 H 0.097 0.903 24 H 0.182 0.818 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.152 0.848 28 H 0.108 0.892 29 H 0.027 0.973 30 H 0.048 0.952 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.000 5.334 4.857 14.002 hybrid contribution -0.043 -0.751 -0.563 0.940 sum -12.043 4.583 4.294 13.582 Atomic orbital electron populations 1.20156 0.87508 1.02907 1.02496 1.21206 0.94253 0.87470 1.12835 1.22045 0.88612 0.98284 1.08738 1.70242 1.22265 1.08514 1.20284 1.23444 0.85938 0.90773 1.02957 1.20262 0.89171 0.95672 0.94158 1.60919 1.38043 1.20124 1.12071 1.19204 0.82367 0.90275 0.97702 0.94765 1.22432 1.04838 0.99605 0.96055 1.21089 1.07941 1.25845 0.98629 0.92036 1.24941 0.95665 0.96725 0.97129 1.69876 1.12695 1.37551 1.33546 0.86549 0.77197 0.79315 0.84231 1.20340 1.21429 1.20371 1.43143 1.07013 1.09268 1.56501 0.74456 0.91163 0.92011 0.90289 0.81844 0.90301 0.92817 0.84825 0.89202 0.97345 0.95154 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.44 36.00 0.38 -0.25 16 2 C -0.04 -0.55 7.24 -81.60 -0.59 -1.14 16 3 C -0.03 -0.43 11.79 -17.81 -0.21 -0.64 16 4 N -0.49 -9.01 11.25 -10.82 -0.12 -9.13 16 5 C 0.23 4.04 7.67 -155.42 -1.19 2.85 16 6 C 0.14 2.55 6.11 -4.97 -0.03 2.52 16 7 N -0.68 -14.74 6.22 -109.21 -0.68 -15.42 16 8 C 0.21 5.31 2.57 -68.86 -0.18 5.13 16 9 H 0.03 0.92 7.80 -51.93 -0.41 0.51 16 10 C -0.17 -4.14 8.94 37.16 0.33 -3.81 16 11 C -0.50 -13.74 8.84 -34.44 -0.30 -14.04 16 12 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 13 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 14 N -0.90 -25.54 11.32 55.43 0.63 -24.91 16 15 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 N -0.56 -7.90 6.15 -6.54 -0.04 -7.94 16 20 H 0.42 4.87 8.96 -40.82 -0.37 4.50 16 21 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 25 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 26 H 0.05 1.01 7.44 -51.93 -0.39 0.62 16 27 H 0.33 7.36 8.46 -39.29 -0.33 7.03 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 29 H 0.01 0.17 7.45 -51.93 -0.39 -0.22 16 30 H 0.03 0.72 8.13 -51.93 -0.42 0.29 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 265.67 15.07 4.00 4.00 Total: -1.00 -30.54 265.67 -7.39 -37.93 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.27 Total: 6.90 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.89 Total: -7.91 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.21 Total: -57.41 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.54 -7.39 -37.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461723424.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.286 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds