Wall clock time and date at job start Sun Mar 29 2020 21:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34674 * 126.59130 * 2 1 4 4 N 1.34124 * 108.01874 * 180.02562 * 3 2 1 5 5 C 1.30493 * 109.25800 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.65156 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.47105 * 275.02933 * 6 5 4 8 8 C 1.46906 * 110.99716 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.46825 * 35.00670 * 8 7 6 10 10 C 1.52997 * 109.47302 * 274.99847 * 8 7 6 11 11 C 1.50699 * 109.46750 * 155.00018 * 8 7 6 12 12 H 1.08003 * 119.99962 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00270 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99500 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00390 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46921 * 60.00425 * 15 13 11 17 17 H 1.48496 * 109.46933 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46946 * 300.00108 * 15 13 11 19 19 N 1.35045 * 108.70024 * 0.26699 * 5 4 3 20 20 H 0.96999 * 126.39408 * 179.74152 * 19 5 4 21 21 H 1.09006 * 109.47219 * 89.96852 * 1 2 3 22 22 H 1.08996 * 109.47504 * 209.97450 * 1 2 3 23 23 H 1.09004 * 109.47182 * 329.97351 * 1 2 3 24 24 H 1.07995 * 125.98834 * 0.05169 * 3 2 1 25 25 H 1.08996 * 109.47653 * 155.02930 * 6 5 4 26 26 H 1.09007 * 109.47191 * 35.02783 * 6 5 4 27 27 H 1.00900 * 110.99849 * 56.04996 * 7 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 29 29 H 1.09001 * 109.46832 * 60.00356 * 10 8 7 30 30 H 1.09004 * 109.47261 * 300.00337 * 10 8 7 31 31 H 0.97002 * 119.99804 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 -0.0006 5 6 3.5968 -0.6507 -0.0015 6 6 4.8317 -1.5144 -0.0029 7 7 5.3017 -1.6946 -1.3830 8 6 6.5074 -2.5328 -1.4233 9 1 6.4459 -3.2952 -0.6468 10 6 7.7425 -1.6615 -1.1861 11 6 6.6126 -3.1969 -2.7720 12 1 5.8594 -3.0141 -3.5241 13 6 7.6710 -4.0369 -3.0462 14 7 8.5884 -4.2590 -2.1305 15 14 7.8010 -4.8606 -4.7178 16 1 7.8837 -3.8222 -5.7762 17 1 9.0199 -5.7078 -4.7586 18 1 6.6025 -5.7069 -4.9471 19 7 2.3229 -1.0990 -0.0075 20 1 2.0392 -2.0265 -0.0129 21 1 -0.3634 0.0006 -1.0277 22 1 -0.3634 -0.8902 0.5134 23 1 -0.3634 0.8898 0.5143 24 1 1.9865 2.1117 0.0008 25 1 4.5960 -2.4863 0.4304 26 1 5.6122 -1.0334 0.5868 27 1 5.4657 -0.8041 -1.8283 28 1 8.6372 -2.2835 -1.2165 29 1 7.6664 -1.1813 -0.2106 30 1 7.8039 -0.8991 -1.9627 31 1 9.3333 -4.8497 -2.3235 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461723424.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:07 Heat of formation + Delta-G solvation = 25.845695 kcal Electronic energy + Delta-G solvation = -13328.504373 eV Core-core repulsion = 11030.509247 eV Total energy + Delta-G solvation = -2297.995126 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.98527 -37.87264 -34.73796 -33.67557 -32.71207 -30.70982 -27.68407 -27.19454 -25.22602 -22.20937 -22.02490 -21.33297 -18.77563 -17.92804 -16.82995 -16.43529 -15.76847 -15.30763 -15.11476 -14.68772 -14.35157 -13.78278 -13.67128 -13.45438 -13.23950 -13.10265 -12.81814 -12.71863 -12.39391 -12.16091 -11.90921 -11.09309 -10.96521 -10.93552 -10.47809 -9.24613 -8.99108 -8.09121 -6.20568 1.07808 1.44722 1.46129 1.54050 2.11677 2.23971 2.45630 3.19165 3.47898 3.86746 4.06177 4.21542 4.39050 4.47647 4.63312 4.73916 4.82467 4.87838 4.93588 5.08824 5.13477 5.36723 5.39662 5.68501 5.79043 5.86723 6.23949 6.48542 6.60345 6.67790 6.91252 7.17093 7.48879 8.96109 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053114 B = 0.006343 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.038143 B = 4413.305505 C = 4716.686267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.019 4.019 3 C -0.059 4.059 4 N -0.524 5.524 5 C 0.205 3.795 6 C 0.146 3.854 7 N -0.679 5.679 8 C 0.217 3.783 9 H 0.013 0.987 10 C -0.158 4.158 11 C -0.517 4.517 12 H 0.053 0.947 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.961 3.039 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.273 1.273 19 N -0.549 5.549 20 H 0.429 0.571 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.099 0.901 24 H 0.186 0.814 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.331 0.669 28 H 0.065 0.935 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.253 5.529 4.663 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.136 4.136 3 C -0.207 4.207 4 N -0.245 5.245 5 C -0.059 4.059 6 C 0.015 3.985 7 N -0.310 5.310 8 C 0.109 3.891 9 H 0.031 0.969 10 C -0.217 4.217 11 C -0.556 4.556 12 H 0.071 0.929 13 C -0.187 4.187 14 N -0.561 5.561 15 Si 0.787 3.213 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.198 1.198 19 N -0.153 5.153 20 H 0.269 0.731 21 H 0.100 0.900 22 H 0.097 0.903 23 H 0.118 0.882 24 H 0.203 0.797 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.148 0.852 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.822 5.430 4.573 15.539 hybrid contribution 0.423 -0.729 -0.423 0.943 sum -13.399 4.701 4.151 14.794 Atomic orbital electron populations 1.20346 0.83900 1.04818 1.03788 1.21934 0.96177 0.86306 1.09225 1.22556 0.87891 1.00099 1.10131 1.70144 1.24455 1.09178 1.20694 1.22989 0.86530 0.90612 1.05770 1.20137 0.89811 0.96508 0.92028 1.60792 1.36232 1.19599 1.14390 1.18981 0.83914 0.90311 0.95931 0.96891 1.22258 1.03452 0.99010 0.97012 1.21365 1.08021 1.26631 0.99563 0.92907 1.25691 0.95281 0.97215 1.00541 1.69994 1.13007 1.37888 1.35166 0.85564 0.77337 0.78359 0.80027 1.19944 1.20876 1.19813 1.43145 1.06249 1.10317 1.55600 0.73104 0.89995 0.90323 0.88209 0.79669 0.89365 0.93505 0.85174 0.91611 0.95541 0.95298 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.44 71.24 0.74 -0.20 16 2 C -0.02 -0.46 7.24 40.95 0.30 -0.17 16 3 C -0.06 -1.69 11.79 83.53 0.98 -0.71 16 4 N -0.52 -18.87 11.25 -188.14 -2.12 -20.99 16 5 C 0.21 7.00 7.67 138.13 1.06 8.05 16 6 C 0.15 5.39 6.11 85.56 0.52 5.91 16 7 N -0.68 -29.65 6.22 -499.45 -3.11 -32.76 16 8 C 0.22 11.02 2.57 44.17 0.11 11.13 16 9 H 0.01 0.72 7.80 -2.39 -0.02 0.70 16 10 C -0.16 -7.78 8.94 71.98 0.64 -7.14 16 11 C -0.52 -28.85 8.84 25.60 0.23 -28.62 16 12 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 13 C 0.01 0.62 5.30 84.65 0.45 1.07 16 14 N -0.92 -52.79 11.32 21.45 0.24 -52.55 16 15 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 N -0.55 -14.69 6.15 -174.61 -1.07 -15.77 16 20 H 0.43 9.20 8.96 -92.71 -0.83 8.37 16 21 H 0.08 0.99 8.14 -2.38 -0.02 0.98 16 22 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 25 H 0.09 3.02 8.06 -2.39 -0.02 3.00 16 26 H 0.05 1.78 7.44 -2.38 -0.02 1.76 16 27 H 0.33 14.73 8.46 -89.69 -0.76 13.98 16 28 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 29 H 0.03 1.16 7.45 -2.39 -0.02 1.14 16 30 H 0.03 1.37 8.13 -2.38 -0.02 1.36 16 31 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -65.05 265.67 0.56 -64.50 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.45 Total: 22.27 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 5.04 Total: -10.67 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -6.06 Total: -122.06 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -65.05 0.56 -64.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461723424.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.342 kcal (2) G-P(sol) polarization free energy of solvation -65.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds