Wall clock time and date at job start Sun Mar 29 2020 21:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34671 * 126.59078 * 2 1 4 4 N 1.34128 * 108.02037 * 180.02562 * 3 2 1 5 5 C 1.30498 * 109.25779 * 359.97438 * 4 3 2 6 6 C 1.50694 * 125.65458 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47012 * 275.02947 * 6 5 4 8 8 C 1.46912 * 110.99842 * 179.97438 * 7 6 5 9 9 H 1.09006 * 109.46825 * 324.99874 * 8 7 6 10 10 C 1.52990 * 109.46911 * 84.99795 * 8 7 6 11 11 C 1.50703 * 109.46727 * 205.00196 * 8 7 6 12 12 H 1.08001 * 119.99637 * 265.57552 * 11 8 7 13 13 C 1.37868 * 120.00330 * 85.58323 * 11 8 7 14 14 N 1.31519 * 119.99838 * 352.90999 * 13 11 8 15 15 Si 1.86801 * 120.00315 * 172.91642 * 13 11 8 16 16 H 1.48497 * 109.47426 * 179.97438 * 15 13 11 17 17 H 1.48503 * 109.46840 * 299.99998 * 15 13 11 18 18 H 1.48503 * 109.46954 * 59.99449 * 15 13 11 19 19 N 1.35048 * 108.69964 * 0.27016 * 5 4 3 20 20 H 0.96998 * 126.40100 * 179.73999 * 19 5 4 21 21 H 1.08993 * 109.47192 * 89.97864 * 1 2 3 22 22 H 1.08997 * 109.47177 * 209.97996 * 1 2 3 23 23 H 1.09003 * 109.47023 * 329.97607 * 1 2 3 24 24 H 1.07999 * 125.99095 * 0.03617 * 3 2 1 25 25 H 1.09000 * 109.47432 * 155.02804 * 6 5 4 26 26 H 1.09000 * 109.47119 * 35.02262 * 6 5 4 27 27 H 1.00894 * 111.00056 * 303.95082 * 7 6 5 28 28 H 1.09004 * 109.47341 * 55.56486 * 10 8 7 29 29 H 1.09006 * 109.46820 * 175.55940 * 10 8 7 30 30 H 1.08998 * 109.47431 * 295.56156 * 10 8 7 31 31 H 0.96998 * 120.00224 * 354.56901 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5812 0.6541 -0.0006 5 6 3.5968 -0.6508 -0.0004 6 6 4.8318 -1.5144 -0.0003 7 7 5.3025 -1.6957 -1.3800 8 6 6.5083 -2.5341 -1.4189 9 1 7.1191 -2.3331 -0.5387 10 6 6.1034 -4.0094 -1.4327 11 6 7.2995 -2.2185 -2.6621 12 1 7.1613 -2.8104 -3.5548 13 6 8.1999 -1.1744 -2.6598 14 7 8.2688 -0.3678 -1.6232 15 14 9.3218 -0.9051 -4.1289 16 1 10.1889 0.2745 -3.8800 17 1 10.1682 -2.1082 -4.3324 18 1 8.4996 -0.6673 -5.3425 19 7 2.3229 -1.0990 -0.0057 20 1 2.0391 -2.0266 -0.0103 21 1 -0.3633 0.0004 -1.0276 22 1 -0.3633 -0.8901 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 1.9865 2.1118 0.0006 25 1 4.5957 -2.4860 0.4337 26 1 5.6118 -1.0329 0.5894 27 1 4.5747 -2.0814 -1.9626 28 1 5.4287 -4.1932 -2.2688 29 1 6.9934 -4.6294 -1.5410 30 1 5.5998 -4.2567 -0.4982 31 1 7.6342 -0.4583 -0.8952 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461723426.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:08 Heat of formation + Delta-G solvation = 45.915109 kcal Electronic energy + Delta-G solvation = -13501.783746 eV Core-core repulsion = 11204.658895 eV Total energy + Delta-G solvation = -2297.124851 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.74930 -36.21487 -32.77863 -32.35397 -31.34139 -29.48000 -26.45228 -24.58864 -23.66201 -20.84079 -20.56474 -20.16546 -17.25949 -16.52363 -15.19555 -14.64315 -14.04546 -13.76494 -13.61713 -13.33192 -12.92707 -12.81535 -12.58889 -12.36755 -11.88033 -11.50886 -11.15755 -10.90178 -10.64383 -10.03266 -9.71575 -9.68298 -9.52762 -8.59736 -8.33150 -7.94802 -7.13983 -6.20383 -3.96455 2.25576 3.30648 3.48753 3.52486 3.55479 3.73092 4.63737 4.82630 5.03527 5.09889 5.25300 5.44784 5.55568 5.63958 5.75953 5.86224 6.00862 6.14933 6.25847 6.35849 6.47194 6.50081 6.87719 7.04628 7.08002 7.62805 8.03010 8.38916 8.48081 8.53413 8.64364 9.02081 9.82299 11.19033 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.043720 B = 0.007351 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.287671 B = 3808.150393 C = 4142.417779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.047 4.047 3 C -0.026 4.026 4 N -0.470 5.470 5 C 0.231 3.769 6 C 0.137 3.863 7 N -0.663 5.663 8 C 0.191 3.809 9 H 0.042 0.958 10 C -0.163 4.163 11 C -0.587 4.587 12 H 0.045 0.955 13 C 0.032 3.968 14 N -0.894 5.894 15 Si 1.066 2.934 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.290 1.290 19 N -0.569 5.569 20 H 0.412 0.588 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.079 0.921 24 H 0.164 0.836 25 H 0.024 0.976 26 H 0.095 0.905 27 H 0.316 0.684 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.311 -2.902 3.860 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.162 4.162 3 C -0.175 4.175 4 N -0.188 5.188 5 C -0.033 4.033 6 C 0.006 3.994 7 N -0.295 5.295 8 C 0.085 3.915 9 H 0.060 0.940 10 C -0.222 4.222 11 C -0.626 4.626 12 H 0.063 0.937 13 C -0.176 4.176 14 N -0.528 5.528 15 Si 0.894 3.106 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.216 1.216 19 N -0.173 5.173 20 H 0.249 0.751 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.182 0.818 25 H 0.042 0.958 26 H 0.113 0.887 27 H 0.133 0.867 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.985 -0.801 3.324 11.505 hybrid contribution -2.730 -2.746 0.650 3.926 sum -13.715 -3.547 3.973 14.713 Atomic orbital electron populations 1.20135 0.87572 1.02819 1.02355 1.21168 0.94109 0.87520 1.13409 1.22143 0.88764 0.98316 1.08266 1.70332 1.21570 1.08428 1.18511 1.23523 0.85206 0.91293 1.03326 1.20393 0.90135 0.93436 0.95440 1.61668 1.07685 1.55601 1.04567 1.19468 0.87547 0.85535 0.98903 0.93980 1.22435 1.00394 1.01430 0.97979 1.21759 1.24334 1.18226 0.98261 0.93675 1.25741 0.97857 0.92321 1.01694 1.70673 1.37416 1.36167 1.08548 0.83622 0.75975 0.76086 0.74881 1.20861 1.21676 1.21614 1.43242 1.07253 1.08926 1.57928 0.75140 0.91293 0.92208 0.90255 0.81836 0.95768 0.88724 0.86710 0.94214 0.92806 0.95990 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.44 36.00 0.38 -0.27 16 2 C -0.05 -0.66 7.24 -81.60 -0.59 -1.25 16 3 C -0.03 -0.44 11.79 -17.81 -0.21 -0.65 16 4 N -0.47 -9.80 11.25 -10.82 -0.12 -9.92 16 5 C 0.23 4.34 7.67 -155.41 -1.19 3.15 16 6 C 0.14 2.69 6.11 -4.98 -0.03 2.66 16 7 N -0.66 -15.16 6.15 -109.21 -0.67 -15.84 16 8 C 0.19 4.69 2.05 -68.86 -0.14 4.55 16 9 H 0.04 1.12 6.81 -51.93 -0.35 0.77 16 10 C -0.16 -3.33 9.15 37.15 0.34 -2.99 16 11 C -0.59 -16.49 8.64 -34.44 -0.30 -16.79 16 12 H 0.04 1.27 7.82 -52.49 -0.41 0.86 16 13 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 14 N -0.89 -27.64 13.56 55.43 0.75 -26.89 16 15 Si 1.07 25.72 29.91 -169.99 -5.08 20.63 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 N -0.57 -8.33 6.15 -6.54 -0.04 -8.37 16 20 H 0.41 4.66 8.96 -40.82 -0.37 4.29 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.16 2.29 8.06 -52.49 -0.42 1.87 16 25 H 0.02 0.41 7.52 -51.93 -0.39 0.02 16 26 H 0.09 2.03 8.05 -51.93 -0.42 1.61 16 27 H 0.32 6.82 8.41 -39.29 -0.33 6.49 16 28 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 31 H 0.28 8.65 6.93 -40.82 -0.28 8.37 16 LS Contribution 267.64 15.07 4.03 4.03 Total: -1.00 -33.25 267.64 -7.25 -40.50 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.27 Total: 6.60 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -1.84 Total: -10.76 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.08 Total: -61.01 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.25 -7.25 -40.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461723426.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.419 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds