Wall clock time and date at job start Sun Mar 29 2020 21:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34671 * 126.59078 * 2 1 4 4 N 1.34128 * 108.02037 * 180.02562 * 3 2 1 5 5 C 1.30498 * 109.25779 * 359.97438 * 4 3 2 6 6 C 1.50694 * 125.65458 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47012 * 275.02947 * 6 5 4 8 8 C 1.46912 * 110.99842 * 179.97438 * 7 6 5 9 9 H 1.09006 * 109.46825 * 324.99874 * 8 7 6 10 10 C 1.52990 * 109.46911 * 84.99795 * 8 7 6 11 11 C 1.50703 * 109.46727 * 205.00196 * 8 7 6 12 12 H 1.08001 * 119.99637 * 265.57552 * 11 8 7 13 13 C 1.37868 * 120.00330 * 85.58323 * 11 8 7 14 14 N 1.31519 * 119.99838 * 352.90999 * 13 11 8 15 15 Si 1.86801 * 120.00315 * 172.91642 * 13 11 8 16 16 H 1.48497 * 109.47426 * 179.97438 * 15 13 11 17 17 H 1.48503 * 109.46840 * 299.99998 * 15 13 11 18 18 H 1.48503 * 109.46954 * 59.99449 * 15 13 11 19 19 N 1.35048 * 108.69964 * 0.27016 * 5 4 3 20 20 H 0.96998 * 126.40100 * 179.73999 * 19 5 4 21 21 H 1.08993 * 109.47192 * 89.97864 * 1 2 3 22 22 H 1.08997 * 109.47177 * 209.97996 * 1 2 3 23 23 H 1.09003 * 109.47023 * 329.97607 * 1 2 3 24 24 H 1.07999 * 125.99095 * 0.03617 * 3 2 1 25 25 H 1.09000 * 109.47432 * 155.02804 * 6 5 4 26 26 H 1.09000 * 109.47119 * 35.02262 * 6 5 4 27 27 H 1.00894 * 111.00056 * 303.95082 * 7 6 5 28 28 H 1.09004 * 109.47341 * 55.56486 * 10 8 7 29 29 H 1.09006 * 109.46820 * 175.55940 * 10 8 7 30 30 H 1.08998 * 109.47431 * 295.56156 * 10 8 7 31 31 H 0.96998 * 120.00224 * 354.56901 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5812 0.6541 -0.0006 5 6 3.5968 -0.6508 -0.0004 6 6 4.8318 -1.5144 -0.0003 7 7 5.3025 -1.6957 -1.3800 8 6 6.5083 -2.5341 -1.4189 9 1 7.1191 -2.3331 -0.5387 10 6 6.1034 -4.0094 -1.4327 11 6 7.2995 -2.2185 -2.6621 12 1 7.1613 -2.8104 -3.5548 13 6 8.1999 -1.1744 -2.6598 14 7 8.2688 -0.3678 -1.6232 15 14 9.3218 -0.9051 -4.1289 16 1 10.1889 0.2745 -3.8800 17 1 10.1682 -2.1082 -4.3324 18 1 8.4996 -0.6673 -5.3425 19 7 2.3229 -1.0990 -0.0057 20 1 2.0391 -2.0266 -0.0103 21 1 -0.3633 0.0004 -1.0276 22 1 -0.3633 -0.8901 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 1.9865 2.1118 0.0006 25 1 4.5957 -2.4860 0.4337 26 1 5.6118 -1.0329 0.5894 27 1 4.5747 -2.0814 -1.9626 28 1 5.4287 -4.1932 -2.2688 29 1 6.9934 -4.6294 -1.5410 30 1 5.5998 -4.2567 -0.4982 31 1 7.6342 -0.4583 -0.8952 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461723426.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:08 Heat of formation + Delta-G solvation = 21.161925 kcal Electronic energy + Delta-G solvation = -13502.857125 eV Core-core repulsion = 11204.658895 eV Total energy + Delta-G solvation = -2298.198230 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.02766 -38.04482 -34.55111 -33.74175 -32.78408 -31.01218 -27.79165 -26.58056 -25.20182 -22.52653 -22.07168 -21.49596 -19.01314 -18.12629 -16.69227 -16.21660 -15.61666 -15.40818 -15.24604 -14.79674 -14.32792 -14.25572 -13.66173 -13.51426 -13.23321 -13.18069 -12.93931 -12.66516 -12.48594 -11.93998 -11.66703 -11.01012 -10.86686 -10.64984 -10.50348 -9.21856 -8.90127 -8.45739 -6.23514 1.02184 1.56442 1.64928 1.83499 2.10441 2.16986 2.65000 3.22690 3.51005 3.88141 4.07289 4.17358 4.32885 4.38589 4.46158 4.63410 4.65114 4.72374 4.79001 4.84430 5.09520 5.10831 5.30760 5.33471 5.82608 6.00456 6.28653 6.45467 6.57352 6.77832 6.81719 7.21866 7.63853 8.91487 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.043720 B = 0.007351 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.287671 B = 3808.150393 C = 4142.417779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.015 4.015 3 C -0.066 4.066 4 N -0.522 5.522 5 C 0.203 3.797 6 C 0.150 3.850 7 N -0.682 5.682 8 C 0.190 3.810 9 H 0.012 0.988 10 C -0.151 4.151 11 C -0.598 4.598 12 H 0.043 0.957 13 C -0.022 4.022 14 N -0.929 5.929 15 Si 1.112 2.888 16 H -0.289 1.289 17 H -0.267 1.267 18 H -0.278 1.278 19 N -0.552 5.552 20 H 0.430 0.570 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.097 0.903 24 H 0.181 0.819 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.324 0.676 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.548 -4.089 3.391 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.131 4.131 3 C -0.214 4.214 4 N -0.242 5.242 5 C -0.062 4.062 6 C 0.019 3.981 7 N -0.315 5.315 8 C 0.083 3.917 9 H 0.030 0.970 10 C -0.210 4.210 11 C -0.637 4.637 12 H 0.061 0.939 13 C -0.223 4.223 14 N -0.565 5.565 15 Si 0.934 3.066 16 H -0.215 1.215 17 H -0.193 1.193 18 H -0.203 1.203 19 N -0.158 5.158 20 H 0.270 0.730 21 H 0.102 0.898 22 H 0.101 0.899 23 H 0.116 0.884 24 H 0.198 0.802 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.142 0.858 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.249 -2.037 2.855 13.705 hybrid contribution -2.189 -2.387 0.842 3.346 sum -15.438 -4.423 3.697 16.480 Atomic orbital electron populations 1.20346 0.83479 1.04915 1.03883 1.21908 0.96151 0.86170 1.08907 1.22597 0.88012 1.00256 1.10491 1.70204 1.24393 1.09982 1.19607 1.23051 0.86242 0.90850 1.06008 1.20111 0.90011 0.94854 0.93157 1.61187 1.07637 1.55712 1.06916 1.19320 0.87825 0.88359 0.96178 0.96956 1.22243 1.00725 0.98061 0.99983 1.22186 1.24732 1.17471 0.99265 0.93915 1.27137 0.99682 0.92247 1.03283 1.70800 1.38179 1.38014 1.09484 0.83025 0.74732 0.76557 0.72248 1.21519 1.19257 1.20327 1.43124 1.05929 1.10172 1.56562 0.73019 0.89837 0.89940 0.88391 0.80166 0.92565 0.91806 0.85792 0.93158 0.93111 0.93116 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.44 71.24 0.74 -0.21 16 2 C -0.01 -0.37 7.24 40.95 0.30 -0.08 16 3 C -0.07 -2.17 11.79 83.52 0.98 -1.18 16 4 N -0.52 -22.10 11.25 -188.13 -2.12 -24.21 16 5 C 0.20 7.57 7.67 138.13 1.06 8.63 16 6 C 0.15 5.92 6.11 85.55 0.52 6.45 16 7 N -0.68 -31.41 6.15 -499.45 -3.07 -34.49 16 8 C 0.19 9.40 2.05 44.16 0.09 9.49 16 9 H 0.01 0.68 6.81 -2.38 -0.02 0.66 16 10 C -0.15 -5.92 9.15 71.98 0.66 -5.26 16 11 C -0.60 -33.87 8.64 25.60 0.22 -33.64 16 12 H 0.04 2.38 7.82 -2.91 -0.02 2.36 16 13 C -0.02 -1.33 5.45 84.65 0.46 -0.87 16 14 N -0.93 -59.40 13.56 21.44 0.29 -59.11 16 15 Si 1.11 52.13 29.91 68.60 2.05 54.18 16 16 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 N -0.55 -14.92 6.15 -174.60 -1.07 -16.00 16 20 H 0.43 8.31 8.96 -92.71 -0.83 7.48 16 21 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.18 4.92 8.06 -2.91 -0.02 4.90 16 25 H 0.06 1.83 7.52 -2.39 -0.02 1.82 16 26 H 0.06 2.89 8.05 -2.39 -0.02 2.87 16 27 H 0.32 13.78 8.41 -89.70 -0.75 13.02 16 28 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 29 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.05 1.67 7.57 -2.39 -0.02 1.66 16 31 H 0.26 17.22 6.93 -92.71 -0.64 16.58 16 Total: -1.00 -74.47 267.64 0.79 -73.68 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.32 Total: 22.62 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 5.04 Total: -16.67 kcal Atomic # 7 Polarization: -127.83 SS G_CDS: -5.97 Total: -133.81 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 2.05 Total: 54.18 kcal Total: -74.47 0.79 -73.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461723426.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.837 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds