Wall clock time and date at job start Sun Mar 29 2020 21:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34518 * 126.58092 * 2 1 4 4 O 1.34295 * 108.42175 * 180.02562 * 3 2 1 5 5 C 1.34306 * 109.47714 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.78945 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47107 * 270.02180 * 6 5 4 8 8 C 1.46904 * 111.00029 * 179.97438 * 7 6 5 9 9 H 1.08994 * 109.46818 * 35.00369 * 8 7 6 10 10 C 1.52993 * 109.47308 * 275.00154 * 8 7 6 11 11 C 1.50695 * 109.46760 * 155.00092 * 8 7 6 12 12 H 1.08002 * 120.00262 * 0.02562 * 11 8 7 13 13 C 1.37881 * 119.99815 * 180.02562 * 11 8 7 14 14 N 1.31517 * 119.99938 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99914 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.47233 * 60.00118 * 15 13 11 17 17 H 1.48506 * 109.46832 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47248 * 299.99578 * 15 13 11 19 19 C 1.34510 * 108.42113 * 0.23756 * 5 4 3 20 20 H 1.08999 * 109.47338 * 89.97209 * 1 2 3 21 21 H 1.08998 * 109.47226 * 209.97762 * 1 2 3 22 22 H 1.09007 * 109.47020 * 329.97663 * 1 2 3 23 23 H 1.08006 * 125.78595 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47152 * 150.02267 * 6 5 4 25 25 H 1.09001 * 109.46980 * 30.02368 * 6 5 4 26 26 H 1.00908 * 110.99847 * 56.05051 * 7 6 5 27 27 H 1.09001 * 109.46997 * 59.99957 * 10 8 7 28 28 H 1.08999 * 109.47404 * 180.02562 * 10 8 7 29 29 H 1.09004 * 109.47538 * 300.00000 * 10 8 7 30 30 H 0.97001 * 120.00067 * 180.02562 * 14 13 11 31 31 H 1.07994 * 126.58284 * 179.75727 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5847 0.6617 -0.0006 5 6 3.6156 -0.6810 -0.0015 6 6 4.8580 -1.5340 -0.0029 7 7 5.2611 -1.8098 -1.3883 8 6 6.4721 -2.6404 -1.4289 9 1 6.4570 -3.3454 -0.5978 10 6 7.7081 -1.7458 -1.3167 11 6 6.5174 -3.3990 -2.7302 12 1 5.7260 -3.2760 -3.4549 13 6 7.5692 -4.2500 -2.9958 14 7 8.5331 -4.3994 -2.1136 15 14 7.6258 -5.1898 -4.6092 16 1 7.6472 -4.2289 -5.7413 17 1 8.8499 -6.0296 -4.6502 18 1 6.4258 -6.0576 -4.7190 19 6 2.3496 -1.1353 -0.0068 20 1 -0.3634 0.0005 -1.0276 21 1 -0.3633 -0.8902 0.5135 22 1 -0.3633 0.8898 0.5142 23 1 1.9815 2.1095 0.0004 24 1 4.6541 -2.4739 0.5101 25 1 5.6615 -1.0065 0.5111 26 1 5.3936 -0.9525 -1.9038 27 1 7.6752 -1.1972 -0.3754 28 1 8.6067 -2.3621 -1.3473 29 1 7.7231 -1.0408 -2.1479 30 1 9.2733 -4.9978 -2.3006 31 1 2.0366 -2.1689 -0.0125 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461725333.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:10 Heat of formation + Delta-G solvation = -13.047029 kcal Electronic energy + Delta-G solvation = -13317.301487 eV Core-core repulsion = 10985.327094 eV Total energy + Delta-G solvation = -2331.974392 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.46252 -37.94927 -34.95642 -34.75064 -32.27305 -29.75140 -27.97663 -27.25420 -25.63511 -22.25601 -22.12937 -20.57666 -18.56220 -17.79214 -17.14289 -16.71399 -16.04545 -15.51609 -15.18397 -14.51226 -14.12996 -13.90759 -13.61138 -13.56371 -13.36112 -13.22981 -12.83813 -12.75934 -12.46557 -12.27723 -12.17016 -11.90727 -11.10316 -10.48754 -10.45212 -9.34015 -9.04933 -8.10102 -6.21624 0.81683 1.44584 1.46193 1.54093 1.68871 2.14127 2.45091 3.18227 3.66861 3.82192 4.06630 4.17520 4.41403 4.48003 4.62703 4.72461 4.86499 4.89350 4.93277 5.05526 5.10607 5.20878 5.32486 5.35200 5.67419 5.73763 5.77608 6.21913 6.28171 6.56282 6.68041 6.90215 7.47894 8.95254 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.052321 B = 0.006333 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.027908 B = 4420.073164 C = 4743.702691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.196 4.196 3 C -0.050 4.050 4 O -0.194 6.194 5 C -0.020 4.020 6 C 0.142 3.858 7 N -0.682 5.682 8 C 0.215 3.785 9 H 0.011 0.989 10 C -0.158 4.158 11 C -0.518 4.518 12 H 0.053 0.947 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.962 3.038 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.204 4.204 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.237 0.763 24 H 0.095 0.905 25 H 0.038 0.962 26 H 0.331 0.669 27 H 0.026 0.974 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.262 0.738 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.028 9.063 4.471 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.197 4.197 3 C -0.117 4.117 4 O -0.091 6.091 5 C -0.069 4.069 6 C 0.013 3.987 7 N -0.312 5.312 8 C 0.107 3.893 9 H 0.029 0.971 10 C -0.217 4.217 11 C -0.557 4.557 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.561 5.561 15 Si 0.788 3.212 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.224 4.224 20 H 0.090 0.910 21 H 0.086 0.914 22 H 0.103 0.897 23 H 0.254 0.746 24 H 0.113 0.887 25 H 0.056 0.944 26 H 0.148 0.852 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.032 8.592 4.438 15.436 hybrid contribution 0.964 -0.126 -0.446 1.070 sum -11.068 8.466 3.992 14.495 Atomic orbital electron populations 1.20207 0.87060 1.03528 1.02682 1.20885 0.98791 0.92107 1.07933 1.24570 0.79250 1.01178 1.06695 1.83984 1.30971 1.22257 1.71910 1.22405 0.97373 0.80582 1.06590 1.20296 0.90340 0.96075 0.92002 1.60799 1.37942 1.21569 1.10884 1.18994 0.83853 0.90422 0.96016 0.97139 1.22259 1.03374 0.98887 0.97216 1.21380 1.06600 1.24604 1.03113 0.92829 1.25706 0.95133 0.97675 1.00259 1.69992 1.11425 1.38299 1.36410 0.85548 0.77306 0.78493 0.79859 1.19763 1.20821 1.19902 1.21689 0.91900 1.00663 1.08157 0.91029 0.91356 0.89694 0.74639 0.88715 0.94393 0.85180 0.95482 0.91580 0.95009 0.92877 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.40 71.24 0.74 -0.63 16 2 C -0.20 -5.01 6.16 -19.94 -0.12 -5.13 16 3 C -0.05 -1.23 12.01 66.97 0.80 -0.42 16 4 O -0.19 -6.21 10.65 -2.44 -0.03 -6.24 16 5 C -0.02 -0.67 6.83 24.83 0.17 -0.50 16 6 C 0.14 5.33 6.01 85.56 0.51 5.84 16 7 N -0.68 -30.06 6.22 -499.47 -3.11 -33.17 16 8 C 0.22 11.03 2.57 44.16 0.11 11.15 16 9 H 0.01 0.59 7.80 -2.39 -0.02 0.58 16 10 C -0.16 -7.69 8.94 71.98 0.64 -7.05 16 11 C -0.52 -29.18 8.84 25.60 0.23 -28.96 16 12 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 13 C 0.01 0.59 5.30 84.66 0.45 1.04 16 14 N -0.92 -53.10 11.32 21.45 0.24 -52.86 16 15 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 C -0.20 -6.40 10.77 22.19 0.24 -6.16 16 20 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 23 H 0.24 3.43 8.06 -2.91 -0.02 3.41 16 24 H 0.09 3.50 8.06 -2.39 -0.02 3.48 16 25 H 0.04 1.40 7.44 -2.39 -0.02 1.38 16 26 H 0.33 14.24 8.46 -89.69 -0.76 13.48 16 27 H 0.03 1.16 7.45 -2.39 -0.02 1.14 16 28 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 29 H 0.03 1.48 8.13 -2.39 -0.02 1.46 16 30 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.15 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -62.31 266.96 3.27 -59.04 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.36 Total: 17.83 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 3.78 Total: -30.82 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -2.86 Total: -86.03 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.03 Total: -6.24 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -62.31 3.27 -59.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461725333.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.990 kcal (2) G-P(sol) polarization free energy of solvation -62.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds