Wall clock time and date at job start Sun Mar 29 2020 21:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34512 * 126.57772 * 2 1 4 4 O 1.34302 * 108.41901 * 180.02562 * 3 2 1 5 5 C 1.34303 * 109.47872 * 359.97438 * 4 3 2 6 6 C 1.50704 * 125.78890 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.46886 * 270.02273 * 6 5 4 8 8 C 1.46912 * 110.99650 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.46825 * 324.99951 * 8 7 6 10 10 C 1.52990 * 109.46911 * 84.99872 * 8 7 6 11 11 C 1.50698 * 109.47047 * 205.00211 * 8 7 6 12 12 H 1.08001 * 120.00014 * 265.58261 * 11 8 7 13 13 C 1.37873 * 120.00389 * 85.57764 * 11 8 7 14 14 N 1.31513 * 119.99826 * 352.92402 * 13 11 8 15 15 Si 1.86797 * 120.00330 * 172.91691 * 13 11 8 16 16 H 1.48501 * 109.47513 * 270.00576 * 15 13 11 17 17 H 1.48504 * 109.46937 * 30.00675 * 15 13 11 18 18 H 1.48503 * 109.47075 * 150.00282 * 15 13 11 19 19 C 1.34507 * 108.41991 * 0.24246 * 5 4 3 20 20 H 1.09001 * 109.47134 * 89.98017 * 1 2 3 21 21 H 1.09008 * 109.47023 * 209.97410 * 1 2 3 22 22 H 1.08997 * 109.47211 * 329.97441 * 1 2 3 23 23 H 1.08002 * 125.78906 * 0.03607 * 3 2 1 24 24 H 1.09002 * 109.46599 * 150.02140 * 6 5 4 25 25 H 1.08999 * 109.47032 * 30.02254 * 6 5 4 26 26 H 1.00894 * 111.00222 * 303.95485 * 7 6 5 27 27 H 1.09006 * 109.46820 * 175.55940 * 10 8 7 28 28 H 1.08998 * 109.47431 * 295.56156 * 10 8 7 29 29 H 1.09004 * 109.47341 * 55.56486 * 10 8 7 30 30 H 0.97004 * 120.00306 * 354.55016 * 14 13 11 31 31 H 1.07998 * 126.58099 * 179.76083 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5847 0.6616 -0.0006 5 6 3.6157 -0.6810 -0.0004 6 6 4.8581 -1.5339 -0.0014 7 7 5.2607 -1.8108 -1.3867 8 6 6.4711 -2.6425 -1.4269 9 1 7.1233 -2.3752 -0.5953 10 6 6.0803 -4.1174 -1.3149 11 6 7.1959 -2.4121 -2.7278 12 1 7.0188 -3.0672 -3.5680 13 6 8.0851 -1.3650 -2.8457 14 7 8.1982 -0.4859 -1.8741 15 14 9.1292 -1.1950 -4.3852 16 1 10.4053 -1.9321 -4.2018 17 1 8.3945 -1.7584 -5.5463 18 1 9.4179 0.2408 -4.6315 19 6 2.3496 -1.1353 -0.0051 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8903 0.5135 22 1 -0.3633 0.8897 0.5142 23 1 1.9814 2.1095 0.0006 24 1 4.6542 -2.4734 0.5125 25 1 5.6617 -1.0059 0.5119 26 1 4.5086 -2.2423 -1.9025 27 1 6.9697 -4.7381 -1.4238 28 1 5.6267 -4.3002 -0.3408 29 1 5.3663 -4.3647 -2.1005 30 1 7.6017 -0.5278 -1.1102 31 1 2.0368 -2.1690 -0.0098 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461725334.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:11 Heat of formation + Delta-G solvation = 1.019215 kcal Electronic energy + Delta-G solvation = -13492.871055 eV Core-core repulsion = 11161.506620 eV Total energy + Delta-G solvation = -2331.364434 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.19310 -36.27720 -33.80262 -32.64551 -30.74094 -28.50408 -26.89875 -24.73438 -23.91174 -20.90420 -20.53707 -19.40673 -17.04143 -16.48269 -15.74161 -14.75991 -13.97005 -13.69723 -13.63181 -13.13607 -13.07340 -13.01547 -12.49689 -12.26647 -11.92460 -11.72414 -11.34794 -11.05967 -10.76718 -10.60570 -10.07045 -9.74624 -9.28352 -8.63126 -8.38441 -8.06869 -7.16903 -6.26062 -4.01139 2.09661 2.85634 3.42164 3.48122 3.52623 3.68159 4.59340 4.94813 5.09644 5.22746 5.25655 5.60097 5.64776 5.69676 5.87008 5.91027 6.01600 6.06852 6.20134 6.30068 6.35259 6.50471 6.54613 6.84667 6.89956 7.07844 7.55680 8.01330 8.38208 8.47022 8.62430 8.97042 9.77346 11.13102 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.042375 B = 0.007362 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.605916 B = 3802.420815 C = 4131.239403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.186 4.186 3 C -0.056 4.056 4 O -0.164 6.164 5 C 0.027 3.973 6 C 0.125 3.875 7 N -0.669 5.669 8 C 0.189 3.811 9 H 0.041 0.959 10 C -0.163 4.163 11 C -0.583 4.583 12 H 0.047 0.953 13 C 0.031 3.969 14 N -0.899 5.899 15 Si 1.069 2.931 16 H -0.289 1.289 17 H -0.290 1.290 18 H -0.286 1.286 19 C -0.226 4.226 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.195 0.805 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.322 0.678 27 H 0.052 0.948 28 H 0.023 0.977 29 H 0.040 0.960 30 H 0.277 0.723 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.510 -0.330 4.325 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.188 4.188 3 C -0.124 4.124 4 O -0.059 6.059 5 C -0.025 4.025 6 C -0.004 4.004 7 N -0.302 5.302 8 C 0.084 3.916 9 H 0.059 0.941 10 C -0.223 4.223 11 C -0.623 4.623 12 H 0.065 0.935 13 C -0.177 4.177 14 N -0.533 5.533 15 Si 0.898 3.102 16 H -0.216 1.216 17 H -0.216 1.216 18 H -0.212 1.212 19 C -0.246 4.246 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.212 0.788 24 H 0.063 0.937 25 H 0.099 0.901 26 H 0.139 0.861 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.678 1.343 3.589 10.409 hybrid contribution -1.955 -1.810 0.908 2.815 sum -11.633 -0.467 4.497 12.481 Atomic orbital electron populations 1.20106 0.89754 1.01988 1.01719 1.20381 0.96805 0.92936 1.08633 1.23719 0.80728 0.99385 1.08528 1.84091 1.28752 1.22522 1.70512 1.22736 0.97009 0.80634 1.02086 1.20506 0.90940 0.94039 0.94942 1.61712 1.07644 1.53087 1.07732 1.19475 0.87524 0.85815 0.98770 0.94087 1.22427 1.00504 1.01296 0.98040 1.21834 1.26202 1.15913 0.98310 0.93481 1.25771 0.97223 0.92197 1.02484 1.70660 1.38730 1.34426 1.09525 0.83565 0.75666 0.76149 0.74816 1.21562 1.21592 1.21189 1.21362 0.91915 0.99432 1.11882 0.91785 0.91923 0.92070 0.78798 0.93716 0.90113 0.86051 0.92857 0.95815 0.94053 0.91192 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.40 36.01 0.37 -0.49 16 2 C -0.19 -2.77 6.16 -104.74 -0.65 -3.42 16 3 C -0.06 -0.85 12.01 29.42 0.35 -0.50 16 4 O -0.16 -3.17 10.65 5.71 0.06 -3.11 16 5 C 0.03 0.51 6.83 -35.63 -0.24 0.26 16 6 C 0.12 2.48 6.01 -4.98 -0.03 2.45 16 7 N -0.67 -15.42 6.16 -109.22 -0.67 -16.09 16 8 C 0.19 4.69 2.05 -68.86 -0.14 4.54 16 9 H 0.04 1.09 6.82 -51.93 -0.35 0.74 16 10 C -0.16 -3.40 9.15 37.15 0.34 -3.06 16 11 C -0.58 -16.37 8.64 -34.44 -0.30 -16.66 16 12 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 13 C 0.03 0.88 5.45 -17.82 -0.10 0.79 16 14 N -0.90 -27.48 13.56 55.43 0.75 -26.73 16 15 Si 1.07 25.53 29.91 -169.99 -5.08 20.44 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 C -0.23 -3.74 10.77 -39.70 -0.43 -4.17 16 20 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.20 2.18 8.06 -52.49 -0.42 1.76 16 24 H 0.05 0.80 7.52 -51.93 -0.39 0.41 16 25 H 0.08 1.69 8.06 -51.93 -0.42 1.27 16 26 H 0.32 7.05 8.41 -39.29 -0.33 6.72 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 29 H 0.04 0.82 8.05 -51.93 -0.42 0.40 16 30 H 0.28 8.46 6.94 -40.82 -0.28 8.18 16 31 H 0.14 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 268.92 15.07 4.05 4.05 Total: -1.00 -31.21 268.92 -6.04 -37.25 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.33 Total: 4.43 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -0.81 Total: -20.26 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.08 Total: -42.82 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: 0.06 Total: -3.11 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.21 -6.04 -37.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461725334.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.270 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds