Wall clock time and date at job start Sun Mar 29 2020 21:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34512 * 126.57772 * 2 1 4 4 O 1.34302 * 108.41901 * 180.02562 * 3 2 1 5 5 C 1.34303 * 109.47872 * 359.97438 * 4 3 2 6 6 C 1.50704 * 125.78890 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.46886 * 270.02273 * 6 5 4 8 8 C 1.46912 * 110.99650 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.46825 * 324.99951 * 8 7 6 10 10 C 1.52990 * 109.46911 * 84.99872 * 8 7 6 11 11 C 1.50698 * 109.47047 * 205.00211 * 8 7 6 12 12 H 1.08001 * 120.00014 * 265.58261 * 11 8 7 13 13 C 1.37873 * 120.00389 * 85.57764 * 11 8 7 14 14 N 1.31513 * 119.99826 * 352.92402 * 13 11 8 15 15 Si 1.86797 * 120.00330 * 172.91691 * 13 11 8 16 16 H 1.48501 * 109.47513 * 270.00576 * 15 13 11 17 17 H 1.48504 * 109.46937 * 30.00675 * 15 13 11 18 18 H 1.48503 * 109.47075 * 150.00282 * 15 13 11 19 19 C 1.34507 * 108.41991 * 0.24246 * 5 4 3 20 20 H 1.09001 * 109.47134 * 89.98017 * 1 2 3 21 21 H 1.09008 * 109.47023 * 209.97410 * 1 2 3 22 22 H 1.08997 * 109.47211 * 329.97441 * 1 2 3 23 23 H 1.08002 * 125.78906 * 0.03607 * 3 2 1 24 24 H 1.09002 * 109.46599 * 150.02140 * 6 5 4 25 25 H 1.08999 * 109.47032 * 30.02254 * 6 5 4 26 26 H 1.00894 * 111.00222 * 303.95485 * 7 6 5 27 27 H 1.09006 * 109.46820 * 175.55940 * 10 8 7 28 28 H 1.08998 * 109.47431 * 295.56156 * 10 8 7 29 29 H 1.09004 * 109.47341 * 55.56486 * 10 8 7 30 30 H 0.97004 * 120.00306 * 354.55016 * 14 13 11 31 31 H 1.07998 * 126.58099 * 179.76083 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5847 0.6616 -0.0006 5 6 3.6157 -0.6810 -0.0004 6 6 4.8581 -1.5339 -0.0014 7 7 5.2607 -1.8108 -1.3867 8 6 6.4711 -2.6425 -1.4269 9 1 7.1233 -2.3752 -0.5953 10 6 6.0803 -4.1174 -1.3149 11 6 7.1959 -2.4121 -2.7278 12 1 7.0188 -3.0672 -3.5680 13 6 8.0851 -1.3650 -2.8457 14 7 8.1982 -0.4859 -1.8741 15 14 9.1292 -1.1950 -4.3852 16 1 10.4053 -1.9321 -4.2018 17 1 8.3945 -1.7584 -5.5463 18 1 9.4179 0.2408 -4.6315 19 6 2.3496 -1.1353 -0.0051 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8903 0.5135 22 1 -0.3633 0.8897 0.5142 23 1 1.9814 2.1095 0.0006 24 1 4.6542 -2.4734 0.5125 25 1 5.6617 -1.0059 0.5119 26 1 4.5086 -2.2423 -1.9025 27 1 6.9697 -4.7381 -1.4238 28 1 5.6267 -4.3002 -0.3408 29 1 5.3663 -4.3647 -2.1005 30 1 7.6017 -0.5278 -1.1102 31 1 2.0368 -2.1690 -0.0098 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461725334.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:11 Heat of formation + Delta-G solvation = -19.911891 kcal Electronic energy + Delta-G solvation = -13493.778696 eV Core-core repulsion = 11161.506620 eV Total energy + Delta-G solvation = -2332.272075 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.49823 -38.11863 -34.99846 -34.58160 -32.44096 -29.98079 -28.03140 -26.67671 -25.61515 -22.58879 -22.12325 -20.70303 -18.93850 -17.93907 -17.15136 -16.41270 -15.69764 -15.52861 -15.24252 -14.70732 -14.36810 -14.08412 -13.92515 -13.64392 -13.39314 -13.20878 -12.94741 -12.73367 -12.55378 -12.13906 -11.93970 -11.69846 -10.69030 -10.57054 -10.47481 -9.38288 -8.95356 -8.50144 -6.27174 0.78606 1.55275 1.62121 1.65849 1.81476 2.16447 2.62225 3.19076 3.70287 3.91955 4.01302 4.14555 4.31120 4.36013 4.47126 4.58750 4.64654 4.72282 4.82422 4.87075 5.05975 5.07385 5.14480 5.29369 5.31268 5.70903 5.98156 6.25318 6.27234 6.49988 6.74974 6.78836 7.59880 8.87078 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.042375 B = 0.007362 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.605916 B = 3802.420815 C = 4131.239403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.191 4.191 3 C -0.059 4.059 4 O -0.198 6.198 5 C -0.013 4.013 6 C 0.135 3.865 7 N -0.687 5.687 8 C 0.188 3.812 9 H 0.012 0.988 10 C -0.152 4.152 11 C -0.596 4.596 12 H 0.043 0.957 13 C -0.023 4.023 14 N -0.931 5.931 15 Si 1.116 2.884 16 H -0.272 1.272 17 H -0.273 1.273 18 H -0.290 1.290 19 C -0.214 4.214 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.231 0.769 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.329 0.671 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.263 0.737 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.339 -0.791 3.956 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.193 4.193 3 C -0.126 4.126 4 O -0.094 6.094 5 C -0.064 4.064 6 C 0.006 3.994 7 N -0.319 5.319 8 C 0.082 3.918 9 H 0.030 0.970 10 C -0.211 4.211 11 C -0.635 4.635 12 H 0.062 0.938 13 C -0.223 4.223 14 N -0.567 5.567 15 Si 0.938 3.062 16 H -0.197 1.197 17 H -0.199 1.199 18 H -0.216 1.216 19 C -0.233 4.233 20 H 0.091 0.909 21 H 0.091 0.909 22 H 0.101 0.899 23 H 0.248 0.752 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.147 0.853 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.529 0.853 3.227 12.002 hybrid contribution -1.514 -1.664 1.080 2.495 sum -13.043 -0.811 4.307 13.760 Atomic orbital electron populations 1.20207 0.86676 1.03634 1.02758 1.20871 0.98852 0.91885 1.07643 1.24592 0.79439 1.01415 1.07191 1.84051 1.31060 1.22879 1.71408 1.22570 0.97259 0.80836 1.05721 1.20301 0.91056 0.95112 0.92894 1.61288 1.07426 1.53045 1.10152 1.19338 0.87800 0.88455 0.96250 0.96959 1.22250 1.00805 0.98204 0.99865 1.22227 1.26575 1.15303 0.99352 0.93840 1.27175 0.98730 0.91957 1.04462 1.70785 1.39596 1.36063 1.10261 0.82963 0.75127 0.76071 0.71993 1.19732 1.19853 1.21643 1.21703 0.91247 1.00907 1.09491 0.90914 0.90882 0.89938 0.75230 0.91451 0.92551 0.85331 0.93007 0.93276 0.93131 0.92700 0.82382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.40 71.24 0.74 -0.64 16 2 C -0.19 -5.21 6.16 -19.94 -0.12 -5.34 16 3 C -0.06 -1.72 12.01 66.97 0.80 -0.92 16 4 O -0.20 -7.66 10.65 -2.47 -0.03 -7.69 16 5 C -0.01 -0.51 6.83 24.83 0.17 -0.34 16 6 C 0.14 5.45 6.01 85.56 0.51 5.97 16 7 N -0.69 -32.00 6.16 -499.46 -3.07 -35.08 16 8 C 0.19 9.41 2.05 44.16 0.09 9.50 16 9 H 0.01 0.68 6.82 -2.38 -0.02 0.67 16 10 C -0.15 -6.15 9.15 71.98 0.66 -5.49 16 11 C -0.60 -33.72 8.64 25.60 0.22 -33.50 16 12 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 13 C -0.02 -1.33 5.45 84.65 0.46 -0.87 16 14 N -0.93 -58.57 13.56 21.45 0.29 -58.28 16 15 Si 1.12 51.55 29.91 68.60 2.05 53.61 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 19 C -0.21 -6.70 10.77 22.19 0.24 -6.46 16 20 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.23 4.53 8.06 -2.91 -0.02 4.51 16 24 H 0.07 2.36 7.52 -2.39 -0.02 2.34 16 25 H 0.06 2.50 8.06 -2.39 -0.02 2.48 16 26 H 0.33 14.31 8.41 -89.70 -0.75 13.55 16 27 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.05 1.71 7.57 -2.39 -0.02 1.69 16 29 H 0.05 1.93 8.05 -2.39 -0.02 1.91 16 30 H 0.26 16.82 6.94 -92.71 -0.64 16.18 16 31 H 0.16 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -68.37 268.92 3.50 -64.86 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.49 Total: 20.66 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 3.78 Total: -38.08 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -2.78 Total: -93.36 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.03 Total: -7.69 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.61 kcal Total: -68.37 3.50 -64.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461725334.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.950 kcal (2) G-P(sol) polarization free energy of solvation -68.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds