Wall clock time and date at job start Sun Mar 29 2020 21:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 120.00359 * 2 1 4 4 H 1.48503 * 109.47309 * 270.00438 * 3 2 1 5 5 H 1.48506 * 109.46993 * 30.00021 * 3 2 1 6 6 H 1.48498 * 109.47328 * 150.00153 * 3 2 1 7 7 C 1.40050 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00066 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00159 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99932 * 180.02562 * 9 7 2 12 12 C 1.46504 * 120.00073 * 180.02562 * 11 9 7 13 13 H 1.09001 * 109.25951 * 325.49747 * 12 11 9 14 14 C 1.52876 * 109.26915 * 84.99474 * 12 11 9 15 15 C 1.53303 * 108.58750 * 65.34489 * 14 12 11 16 16 C 1.52879 * 108.57906 * 74.44210 * 15 14 12 17 17 C 1.52708 * 110.15449 * 305.47370 * 16 15 14 18 18 H 1.09002 * 115.38963 * 232.82882 * 17 16 15 19 19 C 1.53655 * 116.02932 * 90.20637 * 17 16 15 20 20 C 1.49178 * 60.26443 * 248.70371 * 19 17 16 21 21 H 1.08991 * 114.68594 * 252.71376 * 20 19 17 22 22 H 0.96997 * 119.99392 * 359.97438 * 1 2 3 23 23 H 0.97003 * 119.99880 * 359.97438 * 11 9 7 24 24 H 1.08998 * 109.62033 * 305.61403 * 14 12 11 25 25 H 1.08995 * 109.61704 * 185.07332 * 14 12 11 26 26 H 1.09002 * 109.61796 * 314.71543 * 15 14 12 27 27 H 1.08997 * 109.76455 * 194.25934 * 15 14 12 28 28 H 1.09004 * 109.35091 * 185.26877 * 16 15 14 29 29 H 1.09001 * 109.35710 * 65.68700 * 16 15 14 30 30 H 1.09006 * 117.53305 * 356.55361 * 19 17 16 31 31 H 1.08995 * 117.53602 * 141.80375 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4383 2.6527 0.7001 6 1 3.5384 1.4401 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 6 1.2163 -4.9165 -0.0011 13 1 0.3020 -4.8039 0.5814 14 6 0.8556 -5.2901 -1.4389 15 6 2.1507 -5.5630 -2.2125 16 6 2.7044 -6.9184 -1.7726 17 6 2.8689 -6.9520 -0.2548 18 1 3.8566 -7.2444 0.1019 19 6 1.6566 -7.4555 0.5438 20 6 2.0561 -6.0208 0.6310 21 1 2.5208 -5.7342 1.5743 22 1 -0.4849 0.8401 0.0004 23 1 2.9189 -3.6477 -0.0009 24 1 0.3165 -4.4664 -1.9069 25 1 0.2336 -6.1851 -1.4394 26 1 2.8789 -4.7818 -1.9942 27 1 1.9439 -5.5819 -3.2825 28 1 3.6730 -7.0833 -2.2447 29 1 2.0165 -7.7064 -2.0791 30 1 0.7513 -7.6969 -0.0132 31 1 1.8517 -8.0765 1.4180 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626192466.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:07 Heat of formation + Delta-G solvation = -31.544940 kcal Electronic energy + Delta-G solvation = -13932.995941 eV Core-core repulsion = 11600.219419 eV Total energy + Delta-G solvation = -2332.776522 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.60271 -36.79897 -33.30841 -32.44255 -31.94242 -28.90084 -26.09877 -23.88859 -22.25069 -20.91014 -19.82217 -17.82684 -17.06899 -16.05902 -15.28675 -14.42775 -14.19845 -13.98950 -13.46392 -13.01626 -12.55195 -12.28726 -12.02984 -11.66835 -11.16536 -11.11497 -10.95527 -10.66705 -10.53747 -10.39445 -10.18269 -9.99454 -9.73707 -9.26458 -8.81693 -7.55863 -7.41938 -6.14742 -4.59968 3.15982 3.22729 3.26139 3.94208 4.14685 4.61612 4.72311 4.97698 5.01901 5.28698 5.48243 5.50929 5.61526 5.68913 5.80769 5.91219 5.93583 6.05399 6.16739 6.22100 6.34308 6.37565 6.65012 6.70297 6.80371 6.91207 7.46928 8.00075 8.19434 8.39307 9.06386 9.61640 10.64631 10.84194 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056846 B = 0.007794 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.437320 B = 3591.718312 C = 3658.960732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.557 3.443 10 O -0.581 6.581 11 N -0.756 5.756 12 C 0.186 3.814 13 H 0.075 0.925 14 C -0.129 4.129 15 C -0.116 4.116 16 C -0.085 4.085 17 C -0.154 4.154 18 H 0.097 0.903 19 C -0.175 4.175 20 C -0.140 4.140 21 H 0.095 0.905 22 H 0.267 0.733 23 H 0.379 0.621 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.862 -10.587 -1.507 12.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.464 6.464 11 N -0.410 5.410 12 C 0.080 3.920 13 H 0.093 0.907 14 C -0.168 4.168 15 C -0.154 4.154 16 C -0.122 4.122 17 C -0.172 4.172 18 H 0.115 0.885 19 C -0.212 4.212 20 C -0.159 4.159 21 H 0.114 0.886 22 H 0.078 0.922 23 H 0.210 0.790 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.767 -10.468 -1.490 11.599 hybrid contribution 0.964 0.746 0.093 1.223 sum 5.731 -9.722 -1.397 11.371 Atomic orbital electron populations 1.70026 1.07016 1.27137 1.35582 1.25699 0.94599 1.00222 0.92668 0.86400 0.80162 0.81545 0.78784 1.19790 1.20500 1.18965 1.20888 0.93542 0.89468 1.54380 0.91540 1.18189 0.87194 0.82399 0.76147 1.90591 1.14092 1.86816 1.54908 1.46082 1.08405 1.04365 1.82144 1.19654 0.94746 0.83357 0.94254 0.90686 1.21975 0.96821 1.00806 0.97168 1.21503 0.98336 0.96758 0.98770 1.21010 1.00564 0.97907 0.92714 1.22165 0.95283 1.05867 0.93866 0.88453 1.22568 0.99153 0.96911 1.02579 1.21638 1.02331 0.91835 1.00055 0.88645 0.92195 0.78991 0.91055 0.92746 0.91185 0.92695 0.92170 0.92209 0.88803 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.27 11.83 55.55 0.66 -22.62 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.35 29.56 -169.99 -5.02 15.32 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.55 -15.54 9.54 -35.63 -0.34 -15.88 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.56 15.89 7.71 -12.99 -0.10 15.79 16 10 O -0.58 -18.86 14.67 5.20 0.08 -18.79 16 11 N -0.76 -17.04 4.34 -55.55 -0.24 -17.29 16 12 C 0.19 3.66 2.69 -68.27 -0.18 3.48 16 13 H 0.08 1.70 7.55 -51.93 -0.39 1.30 16 14 C -0.13 -2.34 5.34 -26.64 -0.14 -2.48 16 15 C -0.12 -1.80 5.91 -26.64 -0.16 -1.96 16 16 C -0.08 -1.08 5.83 -26.94 -0.16 -1.24 16 17 C -0.15 -2.02 6.29 -90.90 -0.57 -2.59 16 18 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 19 C -0.17 -2.26 9.55 -28.27 -0.27 -2.53 16 20 C -0.14 -2.17 5.37 -93.25 -0.50 -2.67 16 21 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 22 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 23 H 0.38 7.69 8.46 -40.82 -0.35 7.35 16 24 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 25 H 0.05 0.88 7.13 -51.93 -0.37 0.51 16 26 H 0.07 1.18 7.23 -51.93 -0.38 0.80 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 30 H 0.09 1.20 7.30 -51.93 -0.38 0.82 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 256.15 15.07 3.86 3.86 Total: -1.00 -32.81 256.15 -7.55 -40.36 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.36 Total: 6.85 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.52 Total: -7.70 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.42 Total: -39.90 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.08 Total: -18.79 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.81 -7.55 -40.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626192466.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.818 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds