Wall clock time and date at job start Sun Mar 29 2020 21:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 120.00359 * 2 1 4 4 H 1.48503 * 109.47309 * 270.00438 * 3 2 1 5 5 H 1.48506 * 109.46993 * 30.00021 * 3 2 1 6 6 H 1.48498 * 109.47328 * 150.00153 * 3 2 1 7 7 C 1.40050 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00066 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00159 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99932 * 180.02562 * 9 7 2 12 12 C 1.46504 * 120.00073 * 180.02562 * 11 9 7 13 13 H 1.09001 * 109.25951 * 325.49747 * 12 11 9 14 14 C 1.52876 * 109.26915 * 84.99474 * 12 11 9 15 15 C 1.53303 * 108.58750 * 65.34489 * 14 12 11 16 16 C 1.52879 * 108.57906 * 74.44210 * 15 14 12 17 17 C 1.52708 * 110.15449 * 305.47370 * 16 15 14 18 18 H 1.09002 * 115.38963 * 232.82882 * 17 16 15 19 19 C 1.53655 * 116.02932 * 90.20637 * 17 16 15 20 20 C 1.49178 * 60.26443 * 248.70371 * 19 17 16 21 21 H 1.08991 * 114.68594 * 252.71376 * 20 19 17 22 22 H 0.96997 * 119.99392 * 359.97438 * 1 2 3 23 23 H 0.97003 * 119.99880 * 359.97438 * 11 9 7 24 24 H 1.08998 * 109.62033 * 305.61403 * 14 12 11 25 25 H 1.08995 * 109.61704 * 185.07332 * 14 12 11 26 26 H 1.09002 * 109.61796 * 314.71543 * 15 14 12 27 27 H 1.08997 * 109.76455 * 194.25934 * 15 14 12 28 28 H 1.09004 * 109.35091 * 185.26877 * 16 15 14 29 29 H 1.09001 * 109.35710 * 65.68700 * 16 15 14 30 30 H 1.09006 * 117.53305 * 356.55361 * 19 17 16 31 31 H 1.08995 * 117.53602 * 141.80375 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4383 2.6527 0.7001 6 1 3.5384 1.4401 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 6 1.2163 -4.9165 -0.0011 13 1 0.3020 -4.8039 0.5814 14 6 0.8556 -5.2901 -1.4389 15 6 2.1507 -5.5630 -2.2125 16 6 2.7044 -6.9184 -1.7726 17 6 2.8689 -6.9520 -0.2548 18 1 3.8566 -7.2444 0.1019 19 6 1.6566 -7.4555 0.5438 20 6 2.0561 -6.0208 0.6310 21 1 2.5208 -5.7342 1.5743 22 1 -0.4849 0.8401 0.0004 23 1 2.9189 -3.6477 -0.0009 24 1 0.3165 -4.4664 -1.9069 25 1 0.2336 -6.1851 -1.4394 26 1 2.8789 -4.7818 -1.9942 27 1 1.9439 -5.5819 -3.2825 28 1 3.6730 -7.0833 -2.2447 29 1 2.0165 -7.7064 -2.0791 30 1 0.7513 -7.6969 -0.0132 31 1 1.8517 -8.0765 1.4180 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626192466.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:07 Heat of formation + Delta-G solvation = -53.932289 kcal Electronic energy + Delta-G solvation = -13933.966729 eV Core-core repulsion = 11600.219419 eV Total energy + Delta-G solvation = -2333.747310 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.97434 -38.81570 -35.09592 -34.38431 -33.53469 -30.53632 -28.13511 -25.32779 -23.56249 -22.07022 -21.76822 -19.54118 -18.83873 -17.54383 -17.20291 -16.02815 -15.94140 -15.55174 -14.86076 -14.40807 -14.23145 -14.13694 -13.61060 -13.14532 -12.99218 -12.77332 -12.62608 -12.27150 -12.06550 -11.93693 -11.80492 -11.35224 -10.94499 -10.88540 -10.48615 -9.82608 -9.40962 -8.28440 -6.85067 1.39120 1.41074 1.56190 2.24180 2.48319 2.77812 3.20103 3.59824 3.74063 3.89162 4.07913 4.15439 4.28383 4.34803 4.47331 4.65084 4.73588 4.89112 4.95951 4.96525 5.10471 5.22370 5.31759 5.36166 5.38821 5.41019 5.52344 5.89890 6.26095 6.35607 6.87136 7.59588 8.51814 8.69203 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056846 B = 0.007794 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.437320 B = 3591.718312 C = 3658.960732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.540 3.460 10 O -0.633 6.633 11 N -0.742 5.742 12 C 0.185 3.815 13 H 0.031 0.969 14 C -0.124 4.124 15 C -0.112 4.112 16 C -0.080 4.080 17 C -0.137 4.137 18 H 0.122 0.878 19 C -0.159 4.159 20 C -0.163 4.163 21 H 0.094 0.906 22 H 0.274 0.726 23 H 0.392 0.608 24 H 0.023 0.977 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.362 -11.622 -1.785 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.611 4.611 8 H 0.104 0.896 9 C 0.345 3.655 10 O -0.520 6.520 11 N -0.395 5.395 12 C 0.079 3.921 13 H 0.050 0.950 14 C -0.163 4.163 15 C -0.149 4.149 16 C -0.118 4.118 17 C -0.155 4.155 18 H 0.140 0.860 19 C -0.196 4.196 20 C -0.182 4.182 21 H 0.112 0.888 22 H 0.084 0.916 23 H 0.225 0.775 24 H 0.042 0.958 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.313 -11.561 -1.770 13.794 hybrid contribution 0.143 1.001 0.177 1.026 sum 7.456 -10.560 -1.593 13.025 Atomic orbital electron populations 1.70201 1.09548 1.28847 1.36693 1.26991 0.95534 1.04990 0.91227 0.85017 0.78762 0.75056 0.79424 1.18591 1.19773 1.17207 1.21433 0.94659 0.90189 1.54831 0.89602 1.18573 0.86809 0.84311 0.75853 1.90543 1.16266 1.87946 1.57280 1.45742 1.08940 1.04268 1.80587 1.19718 0.93764 0.83559 0.95045 0.95047 1.21887 0.98465 0.99811 0.96160 1.21469 0.96121 0.98319 0.99040 1.21038 1.02111 0.96062 0.92552 1.22326 0.96363 1.03025 0.93803 0.86023 1.22697 0.99261 0.94330 1.03330 1.21399 1.04033 0.91989 1.00782 0.88816 0.91647 0.77500 0.95847 0.90618 0.92830 0.91585 0.89668 0.90589 0.88683 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.63 11.83 21.84 0.26 -51.37 16 2 C 0.03 1.56 5.50 85.30 0.47 2.03 16 3 Si 1.00 41.78 29.56 68.60 2.03 43.80 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.57 -33.40 9.54 24.83 0.24 -33.16 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 9 C 0.54 32.31 7.71 86.36 0.67 32.98 16 10 O -0.63 -43.72 14.67 -4.30 -0.06 -43.78 16 11 N -0.74 -34.67 4.34 -447.88 -1.95 -36.61 16 12 C 0.18 7.52 2.69 44.77 0.12 7.64 16 13 H 0.03 1.53 7.55 -2.39 -0.02 1.51 16 14 C -0.12 -4.63 5.34 30.65 0.16 -4.46 16 15 C -0.11 -3.32 5.91 30.66 0.18 -3.14 16 16 C -0.08 -1.76 5.83 30.46 0.18 -1.58 16 17 C -0.14 -3.10 6.29 -10.98 -0.07 -3.17 16 18 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 19 C -0.16 -3.62 9.55 29.60 0.28 -3.34 16 20 C -0.16 -4.88 5.37 -12.50 -0.07 -4.94 16 21 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 22 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 23 H 0.39 16.08 8.46 -92.71 -0.78 15.30 16 24 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.08 2.44 7.13 -2.39 -0.02 2.42 16 26 H 0.05 1.75 7.23 -2.39 -0.02 1.74 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.08 1.48 8.06 -2.39 -0.02 1.46 16 30 H 0.09 2.17 7.30 -2.38 -0.02 2.15 16 31 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -75.62 256.15 2.78 -72.85 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.34 Total: 26.26 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 2.16 Total: -11.14 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -1.69 Total: -87.99 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.06 Total: -43.78 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -75.62 2.78 -72.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626192466.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.914 kcal (2) G-P(sol) polarization free energy of solvation -75.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds