Wall clock time and date at job start Sun Mar 29 2020 21:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46864 * 2 1 4 4 C 1.34953 * 126.03725 * 125.00110 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.20624 * 4 3 2 6 6 C 1.50703 * 126.03521 * 179.76875 * 5 4 3 7 7 H 1.09001 * 109.47659 * 340.00004 * 6 5 4 8 8 C 1.52996 * 109.47067 * 100.00066 * 6 5 4 9 9 N 1.46510 * 109.47152 * 219.99988 * 6 5 4 10 10 C 1.36926 * 119.99866 * 155.00205 * 9 6 5 11 11 H 1.08004 * 120.00542 * 359.97438 * 10 9 6 12 12 C 1.38820 * 119.99987 * 179.97438 * 10 9 6 13 13 N 1.31615 * 120.00007 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99738 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47167 * 89.99828 * 14 12 10 16 16 H 1.48503 * 109.47144 * 210.00076 * 14 12 10 17 17 H 1.48503 * 109.47064 * 329.99878 * 14 12 10 18 18 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 19 19 N 1.30837 * 108.19940 * 0.36269 * 18 5 4 20 20 H 1.08990 * 109.47278 * 299.99670 * 1 2 3 21 21 H 1.09003 * 109.46981 * 60.00430 * 1 2 3 22 22 H 1.09009 * 109.46584 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47551 * 240.00363 * 2 1 3 24 24 H 1.09002 * 109.47429 * 119.99857 * 2 1 3 25 25 H 1.08002 * 126.12372 * 359.93597 * 4 3 2 26 26 H 1.09001 * 109.47104 * 179.97438 * 8 6 5 27 27 H 1.09003 * 109.47197 * 299.99675 * 8 6 5 28 28 H 1.09000 * 109.47142 * 60.00003 * 8 6 5 29 29 H 0.96994 * 119.99534 * 335.00167 * 9 6 5 30 30 H 0.97003 * 119.99406 * 180.02562 * 13 12 10 31 31 H 1.08001 * 125.90034 * 180.14354 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0679 3.2149 0.5486 6 6 3.9461 4.2030 1.2723 7 1 4.1230 3.8548 2.2899 8 6 5.2821 4.3314 0.5378 9 7 3.2828 5.5088 1.3113 10 6 3.5910 6.4039 2.3006 11 1 4.3227 6.1472 3.0524 12 6 2.9630 7.6413 2.3373 13 7 3.2588 8.5015 3.2885 14 14 1.6969 8.0850 1.0374 15 1 0.3485 7.6646 1.4959 16 1 1.7089 9.5533 0.8155 17 1 2.0269 7.3898 -0.2326 18 6 2.3128 3.4723 -0.6001 19 7 1.6808 2.3747 -0.9281 20 1 -0.3633 0.5137 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0278 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.3180 1.4130 1.7366 26 1 5.9171 5.0464 1.0610 27 1 5.7756 3.3599 0.5088 28 1 5.1053 4.6796 -0.4798 29 1 2.6255 5.7391 0.6363 30 1 2.8196 9.3660 3.3143 31 1 2.2578 4.4153 -1.1237 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643086009.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:53 Heat of formation + Delta-G solvation = 87.474684 kcal Electronic energy + Delta-G solvation = -13540.669017 eV Core-core repulsion = 11245.346324 eV Total energy + Delta-G solvation = -2295.322693 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.91736 -35.83341 -34.05879 -31.96934 -30.18359 -29.37752 -27.77059 -24.10542 -23.37347 -21.57564 -20.51488 -19.18439 -17.72184 -16.56219 -15.34953 -14.58204 -14.38290 -14.01323 -13.71072 -13.15504 -12.86281 -12.50592 -12.31542 -12.16805 -12.10120 -11.61415 -11.50079 -10.91873 -10.80355 -10.63346 -10.19482 -9.83587 -9.52752 -9.12546 -8.90014 -7.99452 -7.18762 -5.70529 -3.04392 2.16661 2.71424 3.19336 3.43707 3.47306 3.51217 4.49310 4.66074 4.84968 5.00789 5.09011 5.25643 5.40869 5.50791 5.62999 5.64788 5.82621 5.96450 6.04513 6.15407 6.28900 6.42903 6.62333 6.87256 6.93773 7.15575 7.29150 7.98585 8.07806 8.49492 9.28686 10.01671 10.22869 11.48080 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.040530 B = 0.008189 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.678231 B = 3418.587532 C = 3737.500324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 N -0.381 5.381 4 C 0.047 3.953 5 C -0.217 4.217 6 C 0.249 3.751 7 H 0.058 0.942 8 C -0.157 4.157 9 N -0.745 5.745 10 C -0.238 4.238 11 H 0.091 0.909 12 C 0.003 3.997 13 N -0.936 5.936 14 Si 0.882 3.118 15 H -0.285 1.285 16 H -0.292 1.292 17 H -0.277 1.277 18 C 0.056 3.944 19 N -0.303 5.303 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.170 0.830 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.360 0.640 30 H 0.258 0.742 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.082 -16.968 -6.517 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 N -0.165 5.165 4 C -0.099 4.099 5 C -0.229 4.229 6 C 0.139 3.861 7 H 0.076 0.924 8 C -0.217 4.217 9 N -0.388 5.388 10 C -0.368 4.368 11 H 0.109 0.891 12 C -0.193 4.193 13 N -0.585 5.585 14 Si 0.713 3.287 15 H -0.212 1.212 16 H -0.218 1.218 17 H -0.203 1.203 18 C -0.130 4.130 19 N -0.125 5.125 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.097 0.903 24 H 0.110 0.890 25 H 0.187 0.813 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.193 0.807 30 H 0.068 0.932 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.848 -17.554 -7.122 19.157 hybrid contribution -0.371 0.853 -0.274 0.970 sum -3.219 -16.701 -7.396 18.547 Atomic orbital electron populations 1.22053 0.94146 1.02406 1.03698 1.21555 0.95829 0.78082 1.03205 1.48564 1.36214 1.09853 1.21867 1.22242 0.96326 0.94851 0.96434 1.20648 1.07022 0.95031 1.00162 1.18451 0.88754 0.83437 0.95470 0.92393 1.22363 0.98892 0.99656 1.00793 1.42783 1.49062 1.13804 1.33150 1.19089 1.19548 0.94124 1.04013 0.89131 1.24641 0.99884 0.96613 0.98114 1.69701 1.46178 1.08294 1.34290 0.86575 0.82464 0.77406 0.82272 1.21197 1.21828 1.20268 1.23683 0.95745 0.97001 0.96541 1.77219 1.24024 0.97168 1.14086 0.92023 0.91197 0.91082 0.90331 0.88989 0.81269 0.92350 0.94379 0.93633 0.80667 0.93168 0.80623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.10 37.16 0.38 -1.15 16 2 C 0.13 1.29 7.23 -4.04 -0.03 1.26 16 3 N -0.38 -5.44 3.68 -61.36 -0.23 -5.66 16 4 C 0.05 0.69 11.36 -17.22 -0.20 0.49 16 5 C -0.22 -3.81 5.09 -105.06 -0.53 -4.34 16 6 C 0.25 4.92 3.32 -69.08 -0.23 4.69 16 7 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 8 C -0.16 -2.83 9.47 37.16 0.35 -2.48 16 9 N -0.75 -17.95 4.91 -54.54 -0.27 -18.22 16 10 C -0.24 -6.75 10.41 -15.06 -0.16 -6.90 16 11 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 12 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 13 N -0.94 -29.69 13.97 55.49 0.78 -28.91 16 14 Si 0.88 22.61 27.74 -169.99 -4.71 17.89 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 17 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 18 C 0.06 1.00 11.20 -17.37 -0.19 0.81 16 19 N -0.30 -5.17 12.42 30.62 0.38 -4.79 16 20 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.09 0.64 8.07 -51.93 -0.42 0.22 16 25 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.36 8.61 4.70 -40.82 -0.19 8.42 16 30 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 31 H 0.18 3.00 7.73 -52.49 -0.41 2.60 16 LS Contribution 267.10 15.07 4.03 4.03 Total: -1.00 -33.19 267.10 -5.14 -38.33 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -4.41 Total: 4.97 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.71 Total: -7.64 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.66 Total: -57.59 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.19 -5.14 -38.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643086009.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.805 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds