Wall clock time and date at job start Sun Mar 29 2020 21:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00074 * 2 1 4 4 C 1.50701 * 109.46986 * 293.95051 * 3 2 1 5 5 H 1.07998 * 119.99862 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99850 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99750 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47262 * 60.00348 * 8 6 4 10 10 H 1.48505 * 109.47106 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47049 * 299.99812 * 8 6 4 12 12 C 1.46908 * 110.99797 * 123.94900 * 2 1 3 13 13 C 1.53000 * 109.46812 * 66.05035 * 12 2 1 14 14 H 1.09002 * 109.64122 * 304.99787 * 13 12 2 15 15 C 1.53018 * 109.81703 * 65.52871 * 13 12 2 16 16 C 1.50075 * 110.14678 * 169.22185 * 15 13 12 17 17 C 1.29439 * 124.07516 * 342.86839 * 16 15 13 18 18 C 1.50072 * 124.07282 * 0.47139 * 17 16 15 19 19 C 1.53023 * 110.15017 * 342.86277 * 18 17 16 20 20 H 1.08991 * 109.47567 * 296.04891 * 1 2 3 21 21 H 1.09005 * 109.46726 * 56.04921 * 1 2 3 22 22 H 1.09001 * 109.46785 * 176.04347 * 1 2 3 23 23 H 1.09001 * 109.47167 * 53.94815 * 3 2 1 24 24 H 1.09005 * 109.47537 * 173.95085 * 3 2 1 25 25 H 0.97004 * 119.99344 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.47161 * 306.04785 * 12 2 1 27 27 H 1.09000 * 109.46859 * 186.04818 * 12 2 1 28 28 H 1.09002 * 109.36206 * 289.42557 * 15 13 12 29 29 H 1.09002 * 109.36334 * 49.01537 * 15 13 12 30 30 H 1.08004 * 117.95893 * 162.84591 * 16 15 13 31 31 H 1.07995 * 117.96417 * 180.44231 * 17 16 15 32 32 H 1.09006 * 109.35487 * 222.66031 * 18 17 16 33 33 H 1.09000 * 109.24743 * 103.00761 * 18 17 16 34 34 H 1.08997 * 109.64084 * 289.75731 * 19 18 17 35 35 H 1.08999 * 109.81563 * 169.22131 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0268 3.3494 -1.5285 7 7 2.7119 4.0018 -0.6150 8 14 1.5819 4.1871 -3.1378 9 1 0.1046 4.2236 -3.2850 10 1 2.1131 5.5739 -3.1374 11 1 2.1737 3.4301 -4.2700 12 6 1.9954 -0.7659 1.1377 13 6 1.6314 -2.2426 0.9705 14 1 0.5534 -2.3421 0.8431 15 6 2.3491 -2.8185 -0.2521 16 6 2.2121 -4.3128 -0.2755 17 6 1.8653 -5.0254 0.7479 18 6 1.5419 -4.4560 2.0982 19 6 2.0788 -3.0274 2.2102 20 1 -0.3634 0.4512 0.9232 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 1.5610 1.9274 0.8309 24 1 3.0797 1.3445 0.1083 25 1 2.9859 4.9182 -0.7767 26 1 1.5610 -0.3871 2.0629 27 1 3.0796 -0.6610 1.1758 28 1 1.9104 -2.4013 -1.1585 29 1 3.4055 -2.5532 -0.2092 30 1 2.4152 -4.8254 -1.2042 31 1 1.8044 -6.0963 0.6221 32 1 1.9989 -5.0752 2.8702 33 1 0.4606 -4.4475 2.2350 34 1 3.1676 -3.0479 2.2577 35 1 1.6816 -2.5527 3.1074 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308273193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:08 Heat of formation + Delta-G solvation = -0.561648 kcal Electronic energy + Delta-G solvation = -13882.531874 eV Core-core repulsion = 11686.931983 eV Total energy + Delta-G solvation = -2195.599891 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.71491 -36.08095 -32.68389 -31.18877 -30.47319 -27.15994 -26.21622 -23.91232 -22.79487 -20.95658 -19.71554 -17.67346 -16.34340 -15.75462 -14.83158 -14.44109 -14.27304 -13.93022 -13.17351 -12.99001 -12.90185 -12.32718 -12.11634 -11.89612 -11.59966 -11.28922 -11.02153 -10.81215 -10.74798 -10.53750 -10.21882 -10.11432 -9.90577 -9.65487 -9.12662 -8.80322 -8.40200 -7.15756 -5.99499 -4.00625 2.45326 3.35436 3.39204 3.42327 4.44796 4.82844 4.93660 4.99460 5.28068 5.36298 5.48869 5.53349 5.61533 5.75984 5.79341 5.97813 6.07583 6.14384 6.21093 6.22529 6.33547 6.35445 6.44912 6.61338 6.74051 6.83393 6.84838 7.15230 7.34834 7.40172 7.84096 8.14148 8.26498 8.60972 9.07051 9.63356 11.11439 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.058998 B = 0.006384 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.476084 B = 4384.703864 C = 4549.364785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.539 5.539 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.060 3.940 13 C -0.082 4.082 14 H 0.069 0.931 15 C -0.078 4.078 16 C -0.143 4.143 17 C -0.174 4.174 18 C -0.086 4.086 19 C -0.116 4.116 20 H 0.008 0.992 21 H 0.072 0.928 22 H 0.046 0.954 23 H -0.011 1.011 24 H 0.029 0.971 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 -14.095 3.959 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.263 5.263 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.069 4.069 13 C -0.101 4.101 14 H 0.088 0.912 15 C -0.115 4.115 16 C -0.161 4.161 17 C -0.192 4.192 18 C -0.123 4.123 19 C -0.154 4.154 20 H 0.027 0.973 21 H 0.091 0.909 22 H 0.064 0.936 23 H 0.007 0.993 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.761 -14.134 3.556 14.680 hybrid contribution -0.433 0.895 -0.115 1.001 sum -2.195 -13.239 3.440 13.853 Atomic orbital electron populations 1.22239 0.89257 0.99419 1.00324 1.62084 1.06696 1.17561 1.39934 1.19722 0.95313 0.81784 0.96475 1.21141 1.34705 0.96886 1.01737 0.91936 1.24994 0.95355 0.97367 0.96955 1.69956 1.38462 1.11447 1.34113 0.86564 0.78663 0.78325 0.83856 1.20326 1.21389 1.20170 1.22110 0.99896 0.92450 0.92435 1.21223 1.00176 0.94383 0.94268 0.91234 1.20392 1.00913 0.90765 0.99457 1.22278 0.99194 0.96831 0.97799 1.21961 1.03035 0.98866 0.95329 1.20391 1.00688 0.96177 0.95035 1.21649 1.00913 0.94729 0.98133 0.97330 0.90914 0.93554 0.99318 0.95333 0.92925 0.96140 0.91559 0.89793 0.91012 0.88495 0.88724 0.91693 0.91410 0.91897 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.15 60.06 0.55 1.27 16 2 N -0.54 -11.76 4.45 -244.37 -1.09 -12.85 16 3 C 0.19 5.11 4.72 -4.98 -0.02 5.08 16 4 C -0.51 -14.40 8.46 -34.44 -0.29 -14.69 16 5 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 C 0.06 1.10 4.36 -3.82 -0.02 1.08 16 13 C -0.08 -1.23 2.14 -90.40 -0.19 -1.43 16 14 H 0.07 1.08 6.33 -51.93 -0.33 0.75 16 15 C -0.08 -1.17 5.23 -28.18 -0.15 -1.32 16 16 C -0.14 -1.85 9.80 -35.90 -0.35 -2.20 16 17 C -0.17 -2.06 9.80 -35.90 -0.35 -2.41 16 18 C -0.09 -0.96 6.11 -28.17 -0.17 -1.14 16 19 C -0.12 -1.48 5.31 -26.51 -0.14 -1.62 16 20 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 21 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 22 H 0.05 0.80 6.37 -51.93 -0.33 0.47 16 23 H -0.01 -0.31 8.12 -51.93 -0.42 -0.74 16 24 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.38 8.12 -51.93 -0.42 -0.05 16 27 H 0.07 1.24 7.90 -51.93 -0.41 0.82 16 28 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 29 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 30 H 0.10 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.09 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 279.06 15.07 4.21 4.21 Total: -1.00 -29.46 279.06 -8.39 -37.84 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.98 Total: -3.77 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -1.24 Total: -15.90 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.35 Total: -39.20 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.46 -8.39 -37.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308273193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.283 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds