Wall clock time and date at job start Sun Mar 29 2020 21:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00074 * 2 1 4 4 C 1.50701 * 109.46986 * 293.95051 * 3 2 1 5 5 H 1.07998 * 119.99862 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99850 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99750 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47262 * 60.00348 * 8 6 4 10 10 H 1.48505 * 109.47106 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47049 * 299.99812 * 8 6 4 12 12 C 1.46908 * 110.99797 * 123.94900 * 2 1 3 13 13 C 1.53000 * 109.46812 * 66.05035 * 12 2 1 14 14 H 1.09002 * 109.64122 * 304.99787 * 13 12 2 15 15 C 1.53018 * 109.81703 * 65.52871 * 13 12 2 16 16 C 1.50075 * 110.14678 * 169.22185 * 15 13 12 17 17 C 1.29439 * 124.07516 * 342.86839 * 16 15 13 18 18 C 1.50072 * 124.07282 * 0.47139 * 17 16 15 19 19 C 1.53023 * 110.15017 * 342.86277 * 18 17 16 20 20 H 1.08991 * 109.47567 * 296.04891 * 1 2 3 21 21 H 1.09005 * 109.46726 * 56.04921 * 1 2 3 22 22 H 1.09001 * 109.46785 * 176.04347 * 1 2 3 23 23 H 1.09001 * 109.47167 * 53.94815 * 3 2 1 24 24 H 1.09005 * 109.47537 * 173.95085 * 3 2 1 25 25 H 0.97004 * 119.99344 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.47161 * 306.04785 * 12 2 1 27 27 H 1.09000 * 109.46859 * 186.04818 * 12 2 1 28 28 H 1.09002 * 109.36206 * 289.42557 * 15 13 12 29 29 H 1.09002 * 109.36334 * 49.01537 * 15 13 12 30 30 H 1.08004 * 117.95893 * 162.84591 * 16 15 13 31 31 H 1.07995 * 117.96417 * 180.44231 * 17 16 15 32 32 H 1.09006 * 109.35487 * 222.66031 * 18 17 16 33 33 H 1.09000 * 109.24743 * 103.00761 * 18 17 16 34 34 H 1.08997 * 109.64084 * 289.75731 * 19 18 17 35 35 H 1.08999 * 109.81563 * 169.22131 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0268 3.3494 -1.5285 7 7 2.7119 4.0018 -0.6150 8 14 1.5819 4.1871 -3.1378 9 1 0.1046 4.2236 -3.2850 10 1 2.1131 5.5739 -3.1374 11 1 2.1737 3.4301 -4.2700 12 6 1.9954 -0.7659 1.1377 13 6 1.6314 -2.2426 0.9705 14 1 0.5534 -2.3421 0.8431 15 6 2.3491 -2.8185 -0.2521 16 6 2.2121 -4.3128 -0.2755 17 6 1.8653 -5.0254 0.7479 18 6 1.5419 -4.4560 2.0982 19 6 2.0788 -3.0274 2.2102 20 1 -0.3634 0.4512 0.9232 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 1.5610 1.9274 0.8309 24 1 3.0797 1.3445 0.1083 25 1 2.9859 4.9182 -0.7767 26 1 1.5610 -0.3871 2.0629 27 1 3.0796 -0.6610 1.1758 28 1 1.9104 -2.4013 -1.1585 29 1 3.4055 -2.5532 -0.2092 30 1 2.4152 -4.8254 -1.2042 31 1 1.8044 -6.0963 0.6221 32 1 1.9989 -5.0752 2.8702 33 1 0.4606 -4.4475 2.2350 34 1 3.1676 -3.0479 2.2577 35 1 1.6816 -2.5527 3.1074 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308273193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:08 Heat of formation + Delta-G solvation = -17.883293 kcal Electronic energy + Delta-G solvation = -13883.282997 eV Core-core repulsion = 11686.931983 eV Total energy + Delta-G solvation = -2196.351014 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.94396 -37.68661 -34.75197 -32.53652 -31.52355 -29.18263 -27.77092 -25.63927 -23.95511 -22.56058 -21.22424 -18.74274 -18.48654 -16.93698 -16.61793 -16.09555 -15.87311 -15.27990 -14.72661 -14.32541 -14.16223 -13.88858 -13.56099 -13.18895 -13.04547 -12.94255 -12.72276 -12.55298 -12.37785 -12.32101 -11.95622 -11.48148 -11.40256 -11.04251 -10.88791 -10.61071 -9.77873 -8.98166 -8.20263 -6.30732 1.41066 1.44655 1.50086 1.52572 2.40632 3.11924 3.33639 3.81821 3.90224 4.07547 4.36610 4.45083 4.48288 4.55034 4.60251 4.73713 4.76912 4.85714 4.87782 4.95946 5.06668 5.10059 5.17125 5.19674 5.27771 5.34154 5.43551 5.56141 5.65543 5.86763 6.05602 6.16653 6.34961 6.65815 6.85640 7.39084 8.90818 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.058998 B = 0.006384 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.476084 B = 4384.703864 C = 4549.364785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.544 5.544 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.971 3.029 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.060 3.940 13 C -0.073 4.073 14 H 0.071 0.929 15 C -0.075 4.075 16 C -0.163 4.163 17 C -0.161 4.161 18 C -0.086 4.086 19 C -0.114 4.114 20 H 0.007 0.993 21 H 0.056 0.944 22 H 0.078 0.922 23 H -0.041 1.041 24 H 0.001 0.999 25 H 0.264 0.736 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 -15.721 3.683 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.268 5.268 3 C 0.080 3.920 4 C -0.562 4.562 5 H 0.082 0.918 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.193 1.193 12 C -0.068 4.068 13 C -0.092 4.092 14 H 0.089 0.911 15 C -0.112 4.112 16 C -0.181 4.181 17 C -0.179 4.179 18 C -0.123 4.123 19 C -0.152 4.152 20 H 0.026 0.974 21 H 0.075 0.925 22 H 0.097 0.903 23 H -0.023 1.023 24 H 0.019 0.981 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.657 -15.787 3.287 16.343 hybrid contribution -0.145 1.360 0.044 1.368 sum -2.803 -14.427 3.331 15.069 Atomic orbital electron populations 1.22227 0.87848 1.01157 0.99528 1.62015 1.07992 1.14855 1.41916 1.19387 0.93520 0.84122 0.94953 1.21452 1.34902 0.97534 1.02348 0.91817 1.25946 0.94977 0.98050 1.00793 1.70091 1.39387 1.11890 1.36313 0.85411 0.78850 0.77135 0.79061 1.19169 1.20800 1.19297 1.22199 0.99149 0.94324 0.91128 1.21142 1.00165 0.92018 0.95852 0.91111 1.20279 0.99925 0.92680 0.98347 1.22199 1.01449 0.95333 0.99109 1.22242 1.00719 0.99971 0.94989 1.20458 1.01446 0.95033 0.95390 1.21634 1.00953 0.95665 0.96909 0.97400 0.92534 0.90302 1.02322 0.98084 0.92684 0.96153 0.92616 0.91974 0.92277 0.87462 0.86460 0.89468 0.90370 0.92069 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.15 127.69 1.17 2.78 16 2 N -0.54 -24.24 4.45 -927.04 -4.12 -28.36 16 3 C 0.21 11.42 4.72 85.56 0.40 11.82 16 4 C -0.52 -30.42 8.46 25.60 0.22 -30.20 16 5 H 0.06 3.61 7.12 -2.91 -0.02 3.59 16 6 C 0.00 0.01 5.46 84.66 0.46 0.47 16 7 N -0.94 -57.47 13.29 21.45 0.28 -57.19 16 8 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 C 0.06 2.23 4.36 86.30 0.38 2.61 16 13 C -0.07 -2.13 2.14 -10.65 -0.02 -2.15 16 14 H 0.07 2.05 6.33 -2.39 -0.02 2.04 16 15 C -0.08 -2.22 5.23 29.66 0.15 -2.07 16 16 C -0.16 -3.91 9.80 27.04 0.27 -3.64 16 17 C -0.16 -3.29 9.80 27.04 0.27 -3.03 16 18 C -0.09 -1.63 6.11 29.66 0.18 -1.45 16 19 C -0.11 -2.65 5.31 30.74 0.16 -2.48 16 20 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 21 H 0.06 2.41 6.76 -2.38 -0.02 2.40 16 22 H 0.08 2.60 6.37 -2.39 -0.02 2.59 16 23 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 24 H 0.00 0.06 7.93 -2.38 -0.02 0.04 16 25 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 26 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 27 H 0.06 2.15 7.90 -2.39 -0.02 2.13 16 28 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 29 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 30 H 0.11 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.12 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.45 8.12 -2.39 -0.02 1.43 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -63.75 279.06 2.84 -60.91 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 1.02 Total: 5.09 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 3.63 Total: -27.34 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -3.84 Total: -85.55 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.75 2.84 -60.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308273193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.022 kcal (2) G-P(sol) polarization free energy of solvation -63.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds