Wall clock time and date at job start Sun Mar 29 2020 21:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99658 * 2 1 4 4 H 1.48494 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46812 * 299.99605 * 3 2 1 6 6 H 1.48494 * 109.47320 * 59.99420 * 3 2 1 7 7 C 1.37874 * 120.00508 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 H 1.09007 * 110.67229 * 325.69612 * 13 12 11 15 15 C 1.54884 * 110.75650 * 88.93379 * 13 12 11 16 16 C 1.54464 * 104.09982 * 156.10652 * 15 13 12 17 17 H 1.09003 * 117.60027 * 116.93792 * 16 15 13 18 18 C 1.53004 * 118.37425 * 272.42734 * 16 15 13 19 19 C 1.52996 * 60.37828 * 93.62752 * 18 16 15 20 20 H 1.09005 * 119.75392 * 111.12473 * 19 18 16 21 21 C 1.54269 * 118.20507 * 266.38358 * 19 18 16 22 22 H 0.96997 * 120.00792 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 24 24 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 25 25 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 26 26 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 27 27 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 28 28 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 29 29 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 30 30 H 1.08993 * 110.48861 * 274.93354 * 15 13 12 31 31 H 1.09002 * 110.48689 * 37.57993 * 15 13 12 32 32 H 1.09002 * 117.45996 * 346.03449 * 18 16 15 33 33 H 1.09001 * 117.46743 * 201.22674 * 18 16 15 34 34 H 1.08999 * 110.48153 * 329.11114 * 21 19 18 35 35 H 1.08997 * 110.60260 * 206.52469 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8901 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4352 -6.1036 0.0018 13 6 1.7350 -7.3949 0.0018 14 1 0.8107 -7.3315 0.5762 15 6 1.4502 -7.8649 -1.4463 16 6 1.3116 -9.3985 -1.3237 17 1 0.3476 -9.8402 -1.5763 18 6 2.5764 -10.2533 -1.4253 19 6 2.0714 -9.8104 -0.0507 20 1 1.6630 -10.5489 0.6393 21 6 2.6497 -8.5153 0.5560 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 2.8721 -3.6041 0.8905 26 1 2.8721 -3.6042 -0.8894 27 1 0.8536 -5.0451 -0.8886 28 1 0.8542 -5.0446 0.8913 29 1 3.0700 -6.0361 0.7832 30 1 0.5247 -7.4235 -1.8156 31 1 2.2835 -7.6098 -2.1010 32 1 3.4776 -9.7741 -1.8080 33 1 2.4537 -11.3031 -1.6917 34 1 3.6780 -8.3659 0.2268 35 1 2.5992 -8.5457 1.6443 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167901229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:08 Heat of formation + Delta-G solvation = 2.236623 kcal Electronic energy + Delta-G solvation = -13295.600773 eV Core-core repulsion = 11100.122224 eV Total energy + Delta-G solvation = -2195.478549 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.59934 -35.94721 -33.47955 -31.56170 -29.08856 -28.31639 -25.79988 -22.71997 -21.62724 -20.57269 -19.83076 -19.60733 -16.40910 -16.22414 -15.52536 -14.71819 -14.38139 -13.96308 -13.34533 -13.24221 -13.03612 -12.29205 -11.83830 -11.76244 -11.37711 -11.19964 -11.10753 -10.87741 -10.78829 -10.51928 -10.43531 -10.14831 -9.75382 -9.64525 -9.29257 -9.00459 -8.32102 -8.14600 -5.96946 -3.98913 3.33248 3.40485 3.45230 3.51591 4.20012 4.49054 4.61141 4.70530 4.85299 5.09600 5.12039 5.37194 5.38917 5.50336 5.54068 5.69795 5.73162 5.83206 5.88230 5.96402 6.03662 6.14171 6.16913 6.33779 6.38026 6.75880 6.83566 7.17324 7.41695 7.67482 7.72242 7.87165 8.03783 8.47245 9.08638 9.65055 11.14595 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.089572 B = 0.004527 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.521073 B = 6183.724660 C = 6272.131020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.685 5.685 13 C 0.081 3.919 14 H 0.050 0.950 15 C -0.084 4.084 16 C -0.165 4.165 17 H 0.106 0.894 18 C -0.153 4.153 19 C -0.168 4.168 20 H 0.107 0.893 21 C -0.097 4.097 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.013 0.987 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.024 0.976 29 H 0.338 0.662 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 -18.269 -0.312 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.316 5.316 13 C -0.029 4.029 14 H 0.068 0.932 15 C -0.123 4.123 16 C -0.184 4.184 17 H 0.124 0.876 18 C -0.190 4.190 19 C -0.186 4.186 20 H 0.125 0.875 21 C -0.135 4.135 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.156 0.844 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.324 -18.119 -0.981 18.448 hybrid contribution -0.070 0.872 0.955 1.295 sum 3.255 -17.247 -0.026 17.551 Atomic orbital electron populations 1.69973 1.06070 1.26427 1.51183 1.25033 0.94843 0.99271 0.95413 0.86542 0.80154 0.83814 0.77536 1.19716 1.21014 1.21068 1.21303 0.93103 0.91059 1.50133 0.92611 1.19076 0.94046 0.91425 0.97108 1.21624 0.99169 0.93023 1.00685 1.22166 0.94113 0.90811 0.99830 1.60578 1.20282 1.01102 1.49600 1.22704 0.95523 0.89043 0.95649 0.93208 1.21979 1.02183 0.91171 0.96929 1.23280 0.96463 0.95522 1.03129 0.87550 1.23031 0.97834 0.99490 0.98639 1.23113 1.05339 0.99710 0.90457 0.87526 1.22098 0.99689 0.92175 0.99570 0.93110 0.96583 0.96821 0.93693 0.92570 0.91525 0.95821 0.84382 0.91524 0.90417 0.88862 0.88709 0.90527 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 11 C 0.06 1.06 5.56 -3.82 -0.02 1.04 16 12 N -0.68 -10.30 6.38 -104.63 -0.67 -10.97 16 13 C 0.08 1.05 3.20 -65.72 -0.21 0.84 16 14 H 0.05 0.68 7.86 -51.93 -0.41 0.27 16 15 C -0.08 -1.05 6.32 -24.97 -0.16 -1.21 16 16 C -0.17 -1.73 6.93 -89.39 -0.62 -2.35 16 17 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 18 C -0.15 -1.43 10.08 -26.73 -0.27 -1.70 16 19 C -0.17 -1.67 6.94 -89.50 -0.62 -2.29 16 20 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 21 C -0.10 -1.06 6.04 -25.07 -0.15 -1.21 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.34 4.74 8.46 -39.29 -0.33 4.41 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 286.84 15.07 4.32 4.32 Total: -1.00 -30.04 286.84 -9.57 -39.62 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.20 Total: -0.56 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -2.75 Total: -22.69 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.07 Total: -37.66 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.04 -9.57 -39.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167901229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.854 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds