Wall clock time and date at job start Sun Mar 29 2020 21:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99658 * 2 1 4 4 H 1.48494 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46812 * 299.99605 * 3 2 1 6 6 H 1.48494 * 109.47320 * 59.99420 * 3 2 1 7 7 C 1.37874 * 120.00508 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 H 1.09007 * 110.67229 * 325.69612 * 13 12 11 15 15 C 1.54884 * 110.75650 * 88.93379 * 13 12 11 16 16 C 1.54464 * 104.09982 * 156.10652 * 15 13 12 17 17 H 1.09003 * 117.60027 * 116.93792 * 16 15 13 18 18 C 1.53004 * 118.37425 * 272.42734 * 16 15 13 19 19 C 1.52996 * 60.37828 * 93.62752 * 18 16 15 20 20 H 1.09005 * 119.75392 * 111.12473 * 19 18 16 21 21 C 1.54269 * 118.20507 * 266.38358 * 19 18 16 22 22 H 0.96997 * 120.00792 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 24 24 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 25 25 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 26 26 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 27 27 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 28 28 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 29 29 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 30 30 H 1.08993 * 110.48861 * 274.93354 * 15 13 12 31 31 H 1.09002 * 110.48689 * 37.57993 * 15 13 12 32 32 H 1.09002 * 117.45996 * 346.03449 * 18 16 15 33 33 H 1.09001 * 117.46743 * 201.22674 * 18 16 15 34 34 H 1.08999 * 110.48153 * 329.11114 * 21 19 18 35 35 H 1.08997 * 110.60260 * 206.52469 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8901 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4352 -6.1036 0.0018 13 6 1.7350 -7.3949 0.0018 14 1 0.8107 -7.3315 0.5762 15 6 1.4502 -7.8649 -1.4463 16 6 1.3116 -9.3985 -1.3237 17 1 0.3476 -9.8402 -1.5763 18 6 2.5764 -10.2533 -1.4253 19 6 2.0714 -9.8104 -0.0507 20 1 1.6630 -10.5489 0.6393 21 6 2.6497 -8.5153 0.5560 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 2.8721 -3.6041 0.8905 26 1 2.8721 -3.6042 -0.8894 27 1 0.8536 -5.0451 -0.8886 28 1 0.8542 -5.0446 0.8913 29 1 3.0700 -6.0361 0.7832 30 1 0.5247 -7.4235 -1.8156 31 1 2.2835 -7.6098 -2.1010 32 1 3.4776 -9.7741 -1.8080 33 1 2.4537 -11.3031 -1.6917 34 1 3.6780 -8.3659 0.2268 35 1 2.5992 -8.5457 1.6443 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167901229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:08 Heat of formation + Delta-G solvation = -15.446854 kcal Electronic energy + Delta-G solvation = -13296.367586 eV Core-core repulsion = 11100.122224 eV Total energy + Delta-G solvation = -2196.245362 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.49945 -37.35900 -35.39176 -33.31564 -30.49297 -29.22549 -27.62525 -24.45907 -22.59895 -22.08463 -21.06417 -20.52856 -18.48372 -17.19961 -16.79416 -16.54745 -15.93576 -15.40535 -14.58016 -14.36931 -14.12130 -14.00093 -13.53119 -13.38681 -12.80469 -12.52549 -12.44289 -12.26468 -12.22646 -11.95141 -11.84316 -11.53416 -11.36659 -11.08335 -10.93389 -10.56718 -10.53502 -9.40042 -8.20774 -6.32097 1.40062 1.40480 1.54283 2.40863 2.71960 3.11454 3.12369 3.74230 3.80529 3.95092 4.19227 4.23845 4.26210 4.38433 4.51857 4.59443 4.69443 4.74459 4.82709 4.92928 4.94528 5.03348 5.05470 5.17575 5.23389 5.24517 5.33960 5.44062 5.52172 5.73607 5.84831 6.10168 6.26766 6.49329 6.84990 7.37382 8.91509 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.089572 B = 0.004527 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.521073 B = 6183.724660 C = 6272.131020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.092 4.092 11 C 0.074 3.926 12 N -0.684 5.684 13 C 0.077 3.923 14 H 0.044 0.956 15 C -0.087 4.087 16 C -0.175 4.175 17 H 0.116 0.884 18 C -0.144 4.144 19 C -0.166 4.166 20 H 0.122 0.878 21 C -0.093 4.093 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.009 1.009 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.022 0.978 29 H 0.346 0.654 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.604 -19.112 -0.048 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.316 5.316 13 C -0.033 4.033 14 H 0.062 0.938 15 C -0.125 4.125 16 C -0.194 4.194 17 H 0.134 0.866 18 C -0.180 4.180 19 C -0.184 4.184 20 H 0.140 0.860 21 C -0.131 4.131 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.165 0.835 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.544 -18.983 -0.715 19.532 hybrid contribution -0.474 1.111 0.862 1.484 sum 4.070 -17.872 0.147 18.330 Atomic orbital electron populations 1.70102 1.07854 1.27752 1.51795 1.26012 0.95797 1.03478 0.94672 0.85364 0.79062 0.78577 0.77837 1.18557 1.20303 1.20246 1.21729 0.93570 0.92374 1.50422 0.92189 1.18985 0.94456 0.93217 0.94716 1.21375 0.98006 0.92848 1.00770 1.21850 0.93986 0.90362 0.99368 1.60501 1.19798 1.01151 1.50114 1.22792 0.95717 0.88560 0.96202 0.93789 1.21944 1.01184 0.93050 0.96299 1.23250 0.97692 0.94144 1.04265 0.86592 1.23121 0.96827 1.00283 0.97813 1.23193 1.05024 0.99511 0.90690 0.85974 1.22053 0.99012 0.91743 1.00247 0.92744 0.99137 0.99077 0.92953 0.92921 0.92395 0.96015 0.83526 0.92517 0.91568 0.89245 0.86673 0.90631 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.01 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -31.80 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.94 5.41 30.59 0.17 -3.78 16 11 C 0.07 2.65 5.56 86.30 0.48 3.12 16 12 N -0.68 -20.12 6.38 -484.93 -3.09 -23.22 16 13 C 0.08 1.93 3.20 46.20 0.15 2.08 16 14 H 0.04 1.17 7.86 -2.38 -0.02 1.15 16 15 C -0.09 -2.12 6.32 31.74 0.20 -1.92 16 16 C -0.18 -3.37 6.93 -10.00 -0.07 -3.44 16 17 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 18 C -0.14 -2.32 10.08 30.59 0.31 -2.01 16 19 C -0.17 -2.89 6.94 -10.07 -0.07 -2.96 16 20 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 21 C -0.09 -1.84 6.04 31.67 0.19 -1.65 16 22 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 23 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 26 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 29 H 0.35 9.27 8.46 -89.69 -0.76 8.51 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -64.04 286.84 1.69 -62.35 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.28 Total: 11.86 kcal Atomic # 6 Polarization: -42.52 SS G_CDS: 2.20 Total: -40.32 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -2.81 Total: -80.90 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.04 1.69 -62.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167901229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.902 kcal (2) G-P(sol) polarization free energy of solvation -64.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds