Wall clock time and date at job start Sun Mar 29 2020 21:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38429 * 122.53885 * 2 1 4 4 C 1.33387 * 114.91542 * 180.27438 * 3 2 1 5 5 S 1.75885 * 109.59583 * 359.77549 * 4 3 2 6 6 C 1.33384 * 122.53698 * 179.83716 * 2 1 3 7 7 C 1.50703 * 125.20461 * 0.02562 * 6 2 1 8 8 N 1.46899 * 109.47107 * 89.71991 * 7 6 2 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.46800 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00575 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99722 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99924 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00036 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47138 * 90.00010 * 14 12 10 16 16 H 1.48502 * 109.46886 * 209.99874 * 14 12 10 17 17 H 1.48495 * 109.47039 * 329.99931 * 14 12 10 18 18 H 1.09000 * 109.46974 * 270.16982 * 1 2 3 19 19 H 1.08999 * 109.46782 * 30.16202 * 1 2 3 20 20 H 1.08997 * 109.47095 * 150.16544 * 1 2 3 21 21 H 1.07991 * 122.54231 * 0.04681 * 3 2 1 22 22 H 1.08002 * 125.20018 * 179.75340 * 4 3 2 23 23 H 1.09002 * 109.47152 * 329.72078 * 7 6 2 24 24 H 1.09001 * 109.46980 * 209.72179 * 7 6 2 25 25 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 26 26 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 27 27 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 28 28 H 0.96998 * 120.00185 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9900 -0.0058 5 16 3.9386 -0.7305 -0.0052 6 6 2.2244 -1.1245 0.0032 7 6 1.6536 -2.5192 0.0066 8 7 1.4624 -2.9734 -1.3772 9 6 0.9065 -4.3328 -1.4131 10 6 0.7253 -4.7636 -2.8458 11 1 0.9964 -4.0948 -3.6493 12 6 0.2135 -6.0118 -3.1308 13 7 -0.1161 -6.8264 -2.1523 14 14 -0.0105 -6.5463 -4.9066 15 1 1.2259 -7.2184 -5.3809 16 1 -1.1535 -7.4898 -4.9991 17 1 -0.2818 -5.3555 -5.7514 18 1 -0.3633 0.0030 1.0277 19 1 -0.3633 0.8885 -0.5164 20 1 -0.3633 -0.8914 -0.5112 21 1 1.7966 2.1464 0.0007 22 1 4.3078 1.7822 -0.0105 23 1 0.6944 -2.5180 0.5244 24 1 2.3418 -3.1922 0.5181 25 1 0.8794 -2.3303 -1.8917 26 1 1.5898 -5.0181 -0.9116 27 1 -0.0578 -4.3444 -0.9050 28 1 -0.4765 -7.7044 -2.3527 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199459.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:37 Heat of formation + Delta-G solvation = 21.114044 kcal Electronic energy + Delta-G solvation = -11414.147844 eV Core-core repulsion = 9363.263085 eV Total energy + Delta-G solvation = -2050.884759 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.33243 -35.20736 -32.57902 -30.69536 -28.66204 -26.19379 -23.80455 -22.16459 -21.37759 -18.05526 -17.24628 -16.14597 -15.05661 -14.73336 -14.45168 -13.96642 -13.27830 -13.06317 -12.71107 -12.14946 -11.95560 -11.79990 -11.65469 -11.20758 -11.04936 -10.73419 -10.67723 -10.41407 -9.97508 -9.23249 -8.50249 -8.37476 -8.08505 -7.33780 -6.04221 -4.06249 1.23590 1.90929 2.29436 2.88683 3.32471 3.38074 3.42190 4.43057 5.05360 5.10258 5.31784 5.43610 5.52112 5.61186 5.71667 5.78656 5.96276 6.07206 6.14796 6.28691 6.64907 6.76688 7.19466 7.37892 7.76213 8.09510 8.35447 8.56339 9.02700 9.58698 11.06879 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.051066 B = 0.006404 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.177496 B = 4370.880325 C = 4491.454818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.121 4.121 3 C -0.127 4.127 4 C -0.231 4.231 5 S 0.109 5.891 6 C -0.150 4.150 7 C 0.124 3.876 8 N -0.683 5.683 9 C 0.193 3.807 10 C -0.514 4.514 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.900 3.100 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.273 1.273 18 H 0.064 0.936 19 H 0.063 0.937 20 H 0.067 0.933 21 H 0.133 0.867 22 H 0.158 0.842 23 H 0.041 0.959 24 H 0.074 0.926 25 H 0.331 0.669 26 H 0.029 0.971 27 H -0.012 1.012 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 13.810 5.433 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 C -0.158 4.158 4 C -0.367 4.367 5 S 0.374 5.626 6 C -0.268 4.268 7 C -0.007 4.007 8 N -0.314 5.314 9 C 0.067 3.933 10 C -0.552 4.552 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.728 3.272 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 H 0.083 0.917 19 H 0.082 0.918 20 H 0.086 0.914 21 H 0.151 0.849 22 H 0.176 0.824 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.148 0.852 26 H 0.047 0.953 27 H 0.006 0.994 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.736 12.543 5.393 14.810 hybrid contribution -2.240 0.656 -0.651 2.423 sum 3.496 13.199 4.743 14.454 Atomic orbital electron populations 1.20482 0.90053 1.02721 1.01876 1.18835 0.97324 0.91675 1.05551 1.19958 0.92897 0.98907 1.04021 1.25513 0.99644 0.99503 1.12035 1.84265 1.06588 0.99373 1.72361 1.24481 0.95475 0.99240 1.07598 1.20368 0.98401 0.88561 0.93398 1.60745 1.55529 1.06006 1.09109 1.19593 0.92760 0.83431 0.97508 1.21165 1.41626 1.00386 0.92071 0.91910 1.24987 0.95482 0.96505 0.97567 1.69961 1.43846 1.08573 1.31368 0.86465 0.77654 0.78448 0.84647 1.20593 1.21292 1.19819 0.91688 0.91765 0.91389 0.84896 0.82422 0.94146 0.90774 0.85186 0.95295 0.99408 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 9.60 36.01 0.35 -0.84 15 2 C -0.12 -1.78 5.80 -106.25 -0.62 -2.39 15 3 C -0.13 -1.64 9.98 -41.21 -0.41 -2.05 15 4 C -0.23 -2.91 11.23 29.04 0.33 -2.58 15 5 S 0.11 1.60 23.33 -107.50 -2.51 -0.91 15 6 C -0.15 -2.45 6.02 -36.00 -0.22 -2.67 15 7 C 0.12 2.29 5.54 -4.98 -0.03 2.26 15 8 N -0.68 -15.00 6.48 -116.34 -0.75 -15.75 15 9 C 0.19 5.10 5.44 -4.98 -0.03 5.08 15 10 C -0.51 -14.68 9.32 -34.44 -0.32 -15.00 15 11 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 13 N -0.90 -26.88 13.29 55.43 0.74 -26.15 15 14 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 15 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 18 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 19 H 0.06 0.71 8.13 -51.93 -0.42 0.29 15 20 H 0.07 0.97 7.07 -51.93 -0.37 0.60 15 21 H 0.13 1.39 8.06 -52.49 -0.42 0.97 15 22 H 0.16 1.54 8.06 -52.49 -0.42 1.12 15 23 H 0.04 0.73 7.33 -51.93 -0.38 0.35 15 24 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 25 H 0.33 7.04 8.53 -39.29 -0.34 6.71 15 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 27 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 15 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 258.18 15.07 3.89 3.89 Total: -1.00 -30.02 258.18 -8.29 -38.31 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -3.59 Total: 0.50 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -1.05 Total: -16.68 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.02 Total: -41.90 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.51 Total: -0.91 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.02 -8.29 -38.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199459.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.419 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds