Wall clock time and date at job start Sun Mar 29 2020 21:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38429 * 122.53885 * 2 1 4 4 C 1.33387 * 114.91542 * 180.27438 * 3 2 1 5 5 S 1.75885 * 109.59583 * 359.77549 * 4 3 2 6 6 C 1.33384 * 122.53698 * 179.83716 * 2 1 3 7 7 C 1.50703 * 125.20461 * 0.02562 * 6 2 1 8 8 N 1.46899 * 109.47107 * 89.71991 * 7 6 2 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.46800 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00575 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99722 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99924 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00036 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47138 * 90.00010 * 14 12 10 16 16 H 1.48502 * 109.46886 * 209.99874 * 14 12 10 17 17 H 1.48495 * 109.47039 * 329.99931 * 14 12 10 18 18 H 1.09000 * 109.46974 * 270.16982 * 1 2 3 19 19 H 1.08999 * 109.46782 * 30.16202 * 1 2 3 20 20 H 1.08997 * 109.47095 * 150.16544 * 1 2 3 21 21 H 1.07991 * 122.54231 * 0.04681 * 3 2 1 22 22 H 1.08002 * 125.20018 * 179.75340 * 4 3 2 23 23 H 1.09002 * 109.47152 * 329.72078 * 7 6 2 24 24 H 1.09001 * 109.46980 * 209.72179 * 7 6 2 25 25 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 26 26 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 27 27 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 28 28 H 0.96998 * 120.00185 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9900 -0.0058 5 16 3.9386 -0.7305 -0.0052 6 6 2.2244 -1.1245 0.0032 7 6 1.6536 -2.5192 0.0066 8 7 1.4624 -2.9734 -1.3772 9 6 0.9065 -4.3328 -1.4131 10 6 0.7253 -4.7636 -2.8458 11 1 0.9964 -4.0948 -3.6493 12 6 0.2135 -6.0118 -3.1308 13 7 -0.1161 -6.8264 -2.1523 14 14 -0.0105 -6.5463 -4.9066 15 1 1.2259 -7.2184 -5.3809 16 1 -1.1535 -7.4898 -4.9991 17 1 -0.2818 -5.3555 -5.7514 18 1 -0.3633 0.0030 1.0277 19 1 -0.3633 0.8885 -0.5164 20 1 -0.3633 -0.8914 -0.5112 21 1 1.7966 2.1464 0.0007 22 1 4.3078 1.7822 -0.0105 23 1 0.6944 -2.5180 0.5244 24 1 2.3418 -3.1922 0.5181 25 1 0.8794 -2.3303 -1.8917 26 1 1.5898 -5.0181 -0.9116 27 1 -0.0578 -4.3444 -0.9050 28 1 -0.4765 -7.7044 -2.3527 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199459.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:37 Heat of formation + Delta-G solvation = 1.675006 kcal Electronic energy + Delta-G solvation = -11414.990784 eV Core-core repulsion = 9363.263085 eV Total energy + Delta-G solvation = -2051.727699 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.49268 -36.95401 -34.62728 -31.99196 -30.12066 -27.96180 -25.29773 -23.59364 -23.10751 -19.22816 -18.82690 -17.93436 -16.69998 -16.23550 -16.02082 -15.47653 -14.74394 -14.45536 -14.16804 -13.78968 -13.39474 -13.20335 -12.86209 -12.82049 -12.60644 -12.49248 -12.34155 -12.01073 -11.56396 -11.34293 -10.67662 -9.56002 -9.23961 -9.12698 -8.23838 -6.35348 0.11892 0.79499 1.20583 1.41110 1.43069 1.54370 1.81910 2.39747 3.09465 3.62545 3.96804 4.11124 4.24271 4.52926 4.59210 4.64394 4.78315 4.80589 5.03811 5.11657 5.20221 5.22269 5.56886 5.58829 5.68259 5.98085 6.38453 6.64033 6.84498 7.35484 8.87704 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.051066 B = 0.006404 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.177496 B = 4370.880325 C = 4491.454818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.111 4.111 3 C -0.136 4.136 4 C -0.209 4.209 5 S 0.085 5.915 6 C -0.189 4.189 7 C 0.131 3.869 8 N -0.682 5.682 9 C 0.208 3.792 10 C -0.536 4.536 11 H 0.063 0.937 12 C 0.003 3.997 13 N -0.933 5.933 14 Si 0.974 3.026 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.263 1.263 18 H 0.078 0.922 19 H 0.087 0.913 20 H 0.047 0.953 21 H 0.166 0.834 22 H 0.192 0.808 23 H 0.042 0.958 24 H 0.063 0.937 25 H 0.336 0.664 26 H 0.001 0.999 27 H -0.034 1.034 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 15.758 4.586 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.167 4.167 4 C -0.345 4.345 5 S 0.350 5.650 6 C -0.307 4.307 7 C 0.001 3.999 8 N -0.313 5.313 9 C 0.081 3.919 10 C -0.575 4.575 11 H 0.081 0.919 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.798 3.202 15 H -0.199 1.199 16 H -0.205 1.205 17 H -0.187 1.187 18 H 0.097 0.903 19 H 0.106 0.894 20 H 0.066 0.934 21 H 0.183 0.817 22 H 0.209 0.791 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.153 0.847 26 H 0.019 0.981 27 H -0.016 1.016 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.838 14.513 4.557 16.293 hybrid contribution -2.246 0.147 -0.314 2.273 sum 3.592 14.660 4.242 15.678 Atomic orbital electron populations 1.20545 0.89082 1.02826 1.02800 1.19211 0.98249 0.91823 1.03131 1.20254 0.92911 0.99526 1.03966 1.25933 1.00371 0.98478 1.09688 1.84314 1.05868 1.01907 1.72956 1.24213 0.96612 0.98269 1.11584 1.20215 0.98416 0.90184 0.91129 1.60607 1.54757 1.04210 1.11700 1.19234 0.91006 0.85414 0.96259 1.21502 1.42089 1.00980 0.92883 0.91870 1.25949 0.94787 0.96403 1.02436 1.70085 1.44336 1.09048 1.33850 0.85310 0.77826 0.78262 0.78762 1.19929 1.20515 1.18717 0.90335 0.89450 0.93415 0.81696 0.79092 0.94023 0.91847 0.84699 0.98121 1.01606 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.24 9.60 71.24 0.68 -1.56 15 2 C -0.11 -3.04 5.80 -20.92 -0.12 -3.16 15 3 C -0.14 -3.05 9.98 21.22 0.21 -2.84 15 4 C -0.21 -4.58 11.23 66.72 0.75 -3.83 15 5 S 0.08 2.40 23.33 -56.49 -1.32 1.08 15 6 C -0.19 -6.12 6.02 24.59 0.15 -5.97 15 7 C 0.13 5.00 5.54 85.56 0.47 5.47 15 8 N -0.68 -30.80 6.48 -521.98 -3.38 -34.18 15 9 C 0.21 11.44 5.44 85.55 0.47 11.90 15 10 C -0.54 -31.16 9.32 25.60 0.24 -30.92 15 11 H 0.06 3.58 7.81 -2.91 -0.02 3.56 15 12 C 0.00 0.15 5.46 84.66 0.46 0.61 15 13 N -0.93 -56.78 13.29 21.45 0.28 -56.49 15 14 Si 0.97 44.67 29.54 68.60 2.03 46.69 15 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 18 H 0.08 1.67 8.14 -2.39 -0.02 1.65 15 19 H 0.09 1.68 8.13 -2.39 -0.02 1.66 15 20 H 0.05 1.34 7.07 -2.39 -0.02 1.32 15 21 H 0.17 2.65 8.06 -2.91 -0.02 2.62 15 22 H 0.19 2.86 8.06 -2.91 -0.02 2.83 15 23 H 0.04 1.56 7.33 -2.39 -0.02 1.54 15 24 H 0.06 2.49 8.14 -2.39 -0.02 2.48 15 25 H 0.34 14.55 8.53 -89.69 -0.76 13.79 15 26 H 0.00 0.04 8.14 -2.39 -0.02 0.02 15 27 H -0.03 -1.96 8.14 -2.39 -0.02 -1.97 15 28 H 0.27 15.13 8.31 -92.71 -0.77 14.36 15 Total: -1.00 -64.70 258.18 1.31 -63.39 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.38 Total: 9.79 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 3.31 Total: -30.29 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -3.10 Total: -90.67 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.32 Total: 1.08 kcal Total: -64.70 1.31 -63.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199459.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.066 kcal (2) G-P(sol) polarization free energy of solvation -64.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds