Wall clock time and date at job start Sun Mar 29 2020 21:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.50705 * 109.47005 * 120.00040 * 2 1 3 5 5 N 1.27564 * 126.41662 * 354.97521 * 4 2 1 6 6 N 1.39147 * 113.16512 * 180.02562 * 5 4 2 7 7 C 1.46500 * 124.43935 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46949 * 270.02971 * 7 6 5 9 9 H 1.07995 * 120.00167 * 359.72205 * 8 7 6 10 10 C 1.37879 * 119.99394 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00338 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99424 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47487 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47233 * 120.00158 * 12 10 8 15 15 H 1.48508 * 109.46883 * 239.99963 * 12 10 8 16 16 C 1.34948 * 111.11992 * 0.27241 * 6 5 4 17 17 O 1.21301 * 127.50168 * 179.70967 * 16 6 5 18 18 C 1.51440 * 126.41274 * 175.01660 * 4 2 1 19 19 H 1.08991 * 109.47150 * 300.00209 * 1 2 3 20 20 H 1.09007 * 109.46706 * 60.00117 * 1 2 3 21 21 H 1.08999 * 109.47000 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47170 * 240.00167 * 2 1 3 23 23 H 1.09000 * 109.46863 * 299.99840 * 3 2 1 24 24 H 1.09003 * 109.46896 * 59.99999 * 3 2 1 25 25 H 1.08998 * 109.47502 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47175 * 150.02997 * 7 6 5 27 27 H 1.09001 * 109.47297 * 30.02505 * 7 6 5 28 28 H 0.96996 * 119.99730 * 179.97438 * 11 10 8 29 29 H 1.08993 * 110.60779 * 298.47835 * 18 4 2 30 30 H 1.08995 * 110.60749 * 61.29849 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.3207 -1.1600 2.1890 6 7 2.0717 -1.7692 3.1894 7 6 1.5067 -2.3683 4.4011 8 6 1.4297 -1.3266 5.4875 9 1 1.7719 -0.3204 5.2961 10 6 0.9270 -1.6598 6.7274 11 7 0.5154 -2.8866 6.9622 12 14 0.8308 -0.3685 8.0738 13 1 1.3536 0.9227 7.5596 14 1 -0.5826 -0.1980 8.4961 15 1 1.6457 -0.8041 9.2365 16 6 3.3893 -1.7302 2.9004 17 8 4.3046 -2.1669 3.5659 18 6 3.4767 -1.0236 1.5611 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6768 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1301 1.4425 0.0005 26 1 2.1423 -3.1903 4.7303 27 1 0.5065 -2.7453 4.1876 28 1 0.1621 -3.1210 7.8346 29 1 3.9098 -1.6788 0.8054 30 1 4.0576 -0.1056 1.6499 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036984755.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:01 Heat of formation + Delta-G solvation = 2.684745 kcal Electronic energy + Delta-G solvation = -13749.562903 eV Core-core repulsion = 11352.844780 eV Total energy + Delta-G solvation = -2396.718122 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.51648 -37.03978 -35.17168 -33.28220 -31.12767 -28.89384 -26.97328 -26.90565 -23.46262 -22.24276 -20.25699 -18.34235 -16.70467 -16.17638 -15.42327 -14.88528 -14.63625 -14.45969 -13.90399 -13.54694 -12.95461 -12.63582 -12.22750 -12.06549 -11.63197 -11.52102 -11.38553 -11.10781 -11.08525 -10.78362 -10.72894 -10.43803 -10.06478 -9.59619 -9.04167 -8.51528 -7.78165 -6.13144 -4.18548 2.11857 3.24023 3.27239 3.34265 3.40693 3.42343 4.22977 4.38677 4.48696 5.00189 5.08710 5.21070 5.21755 5.41573 5.51186 5.65449 5.78021 5.81858 5.93506 6.11203 6.24532 6.36656 6.54364 7.11630 7.24363 7.33541 7.82007 8.06736 8.47219 8.63664 8.87316 9.46277 10.95294 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.033974 B = 0.008663 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.953196 B = 3231.463589 C = 3546.562046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 C -0.145 4.145 4 C 0.050 3.950 5 N -0.209 5.209 6 N -0.443 5.443 7 C 0.266 3.734 8 C -0.531 4.531 9 H 0.059 0.941 10 C 0.063 3.937 11 N -0.894 5.894 12 Si 0.904 3.096 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.489 3.511 17 O -0.510 6.510 18 C -0.173 4.173 19 H 0.064 0.936 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.122 0.878 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 6.388 -14.568 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 C -0.203 4.203 4 C -0.144 4.144 5 N -0.016 5.016 6 N -0.262 5.262 7 C 0.148 3.852 8 C -0.570 4.570 9 H 0.078 0.922 10 C -0.140 4.140 11 N -0.532 5.532 12 Si 0.731 3.269 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.207 1.207 16 C 0.275 3.725 17 O -0.384 6.384 18 C -0.215 4.215 19 H 0.083 0.917 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.108 0.892 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.139 0.861 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.748 5.781 -13.458 14.666 hybrid contribution 0.722 0.646 0.721 1.207 sum 1.469 6.427 -12.737 14.342 Atomic orbital electron populations 1.21740 0.93466 1.02792 1.02089 1.19588 0.96681 0.94981 0.91733 1.21831 1.01257 0.94730 1.02483 1.25039 0.91931 1.00592 0.96792 1.74524 1.24827 1.05361 0.96854 1.50450 1.04302 1.52080 1.19351 1.19459 0.95301 0.93518 0.76876 1.21401 1.42485 0.96858 0.96242 0.92229 1.24928 0.94892 0.95789 0.98378 1.69933 1.42001 1.17928 1.23351 0.86341 0.77754 0.81398 0.81369 1.19744 1.20702 1.20712 1.21188 0.83908 0.80120 0.87234 1.90716 1.41721 1.49025 1.56911 1.22060 0.97570 1.03567 0.98269 0.91658 0.92455 0.92053 0.89150 0.91759 0.92085 0.92300 0.93119 0.93435 0.92493 0.86061 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.70 37.16 0.32 -1.26 16 2 C -0.01 -0.10 3.38 -91.77 -0.31 -0.41 16 3 C -0.14 -1.32 9.17 37.16 0.34 -0.98 16 4 C 0.05 0.77 6.53 -78.73 -0.51 0.25 16 5 N -0.21 -4.22 11.34 35.53 0.40 -3.82 16 6 N -0.44 -10.54 3.52 -61.06 -0.22 -10.76 16 7 C 0.27 7.33 5.99 -5.19 -0.03 7.30 16 8 C -0.53 -15.65 9.39 -34.44 -0.32 -15.97 16 9 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 10 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 11 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 12 Si 0.90 22.22 29.54 -169.99 -5.02 17.19 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 16 C 0.49 10.89 8.43 -10.43 -0.09 10.81 16 17 O -0.51 -13.05 17.82 5.54 0.10 -12.95 16 18 C -0.17 -2.65 6.93 -28.19 -0.20 -2.85 16 19 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 20 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 1.50 8.04 -51.93 -0.42 1.08 16 27 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 266.39 15.07 4.01 4.01 Total: -1.00 -33.48 266.39 -5.07 -38.55 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -4.19 Total: -4.84 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.90 Total: -1.39 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.92 Total: -40.58 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.10 Total: -12.95 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.48 -5.07 -38.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036984755.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.231 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds