Wall clock time and date at job start Sun Mar 29 2020 21:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.50705 * 109.47005 * 120.00040 * 2 1 3 5 5 N 1.27564 * 126.41662 * 354.97521 * 4 2 1 6 6 N 1.39147 * 113.16512 * 180.02562 * 5 4 2 7 7 C 1.46500 * 124.43935 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46949 * 270.02971 * 7 6 5 9 9 H 1.07995 * 120.00167 * 359.72205 * 8 7 6 10 10 C 1.37879 * 119.99394 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00338 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99424 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47487 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47233 * 120.00158 * 12 10 8 15 15 H 1.48508 * 109.46883 * 239.99963 * 12 10 8 16 16 C 1.34948 * 111.11992 * 0.27241 * 6 5 4 17 17 O 1.21301 * 127.50168 * 179.70967 * 16 6 5 18 18 C 1.51440 * 126.41274 * 175.01660 * 4 2 1 19 19 H 1.08991 * 109.47150 * 300.00209 * 1 2 3 20 20 H 1.09007 * 109.46706 * 60.00117 * 1 2 3 21 21 H 1.08999 * 109.47000 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47170 * 240.00167 * 2 1 3 23 23 H 1.09000 * 109.46863 * 299.99840 * 3 2 1 24 24 H 1.09003 * 109.46896 * 59.99999 * 3 2 1 25 25 H 1.08998 * 109.47502 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47175 * 150.02997 * 7 6 5 27 27 H 1.09001 * 109.47297 * 30.02505 * 7 6 5 28 28 H 0.96996 * 119.99730 * 179.97438 * 11 10 8 29 29 H 1.08993 * 110.60779 * 298.47835 * 18 4 2 30 30 H 1.08995 * 110.60749 * 61.29849 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.3207 -1.1600 2.1890 6 7 2.0717 -1.7692 3.1894 7 6 1.5067 -2.3683 4.4011 8 6 1.4297 -1.3266 5.4875 9 1 1.7719 -0.3204 5.2961 10 6 0.9270 -1.6598 6.7274 11 7 0.5154 -2.8866 6.9622 12 14 0.8308 -0.3685 8.0738 13 1 1.3536 0.9227 7.5596 14 1 -0.5826 -0.1980 8.4961 15 1 1.6457 -0.8041 9.2365 16 6 3.3893 -1.7302 2.9004 17 8 4.3046 -2.1669 3.5659 18 6 3.4767 -1.0236 1.5611 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6768 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1301 1.4425 0.0005 26 1 2.1423 -3.1903 4.7303 27 1 0.5065 -2.7453 4.1876 28 1 0.1621 -3.1210 7.8346 29 1 3.9098 -1.6788 0.8054 30 1 4.0576 -0.1056 1.6499 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036984755.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:00 Heat of formation + Delta-G solvation = -21.028308 kcal Electronic energy + Delta-G solvation = -13750.591178 eV Core-core repulsion = 11352.844780 eV Total energy + Delta-G solvation = -2397.746398 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.07786 -38.64483 -36.52275 -35.26677 -32.89352 -30.30351 -28.96211 -27.74994 -25.33968 -23.60731 -21.78244 -19.77077 -18.89434 -17.82120 -17.09722 -16.42560 -16.20852 -15.86354 -15.25058 -14.93081 -14.62107 -14.08421 -13.70611 -13.52927 -13.34466 -12.83662 -12.74845 -12.73636 -12.46127 -12.33661 -12.02096 -11.88428 -11.62346 -11.56894 -10.80540 -10.62063 -9.56579 -8.35454 -6.52288 0.74060 1.31309 1.33845 1.45542 1.64150 1.77881 2.31647 2.89033 2.96974 3.15931 3.86424 4.21157 4.32804 4.38026 4.40654 4.69827 4.79787 4.90046 4.93954 5.07929 5.10995 5.23806 5.33352 5.43563 5.52000 5.58337 5.66271 5.83699 6.51786 6.80655 7.05466 7.19776 8.72915 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.033974 B = 0.008663 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.953196 B = 3231.463589 C = 3546.562046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.009 4.009 3 C -0.143 4.143 4 C 0.094 3.906 5 N -0.266 5.266 6 N -0.465 5.465 7 C 0.281 3.719 8 C -0.554 4.554 9 H 0.048 0.952 10 C 0.011 3.989 11 N -0.924 5.924 12 Si 0.977 3.023 13 H -0.270 1.270 14 H -0.265 1.265 15 H -0.272 1.272 16 C 0.466 3.534 17 O -0.562 6.562 18 C -0.156 4.156 19 H 0.038 0.962 20 H 0.090 0.910 21 H 0.046 0.954 22 H 0.134 0.866 23 H 0.093 0.907 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.015 0.985 27 H 0.027 0.973 28 H 0.273 0.727 29 H 0.166 0.834 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 8.570 -16.752 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.099 4.099 5 N -0.072 5.072 6 N -0.282 5.282 7 C 0.162 3.838 8 C -0.592 4.592 9 H 0.067 0.933 10 C -0.189 4.189 11 N -0.563 5.563 12 Si 0.800 3.200 13 H -0.194 1.194 14 H -0.190 1.190 15 H -0.197 1.197 16 C 0.255 3.745 17 O -0.441 6.441 18 C -0.197 4.197 19 H 0.057 0.943 20 H 0.109 0.891 21 H 0.065 0.935 22 H 0.151 0.849 23 H 0.112 0.888 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.184 0.816 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.122 7.975 -15.682 17.629 hybrid contribution 0.584 -0.008 1.218 1.351 sum 1.706 7.966 -14.464 16.600 Atomic orbital electron populations 1.21761 0.93953 1.02016 1.02469 1.20000 0.96346 0.96110 0.90405 1.21857 1.02315 0.92948 1.02957 1.26187 0.91801 0.95919 0.96003 1.74645 1.25051 1.09405 0.98062 1.50322 1.05426 1.52943 1.19507 1.18818 0.93502 0.92635 0.78864 1.21585 1.43422 0.96646 0.97577 0.93338 1.25913 0.93964 0.98197 1.00776 1.70038 1.42089 1.19806 1.24363 0.85231 0.78585 0.78274 0.77893 1.19446 1.19000 1.19723 1.22361 0.82736 0.79912 0.89496 1.90664 1.42772 1.51491 1.59162 1.22159 0.98006 1.04841 0.94681 0.94279 0.89086 0.93489 0.84852 0.88813 0.94217 0.90659 0.96660 0.95450 0.91826 0.81643 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.70 71.98 0.63 -2.19 16 2 C -0.01 -0.15 3.38 -11.54 -0.04 -0.19 16 3 C -0.14 -1.91 9.17 71.98 0.66 -1.24 16 4 C 0.09 2.64 6.53 46.83 0.31 2.95 16 5 N -0.27 -10.81 11.34 -40.84 -0.46 -11.28 16 6 N -0.46 -23.05 3.52 -465.38 -1.64 -24.69 16 7 C 0.28 16.60 5.99 85.63 0.51 17.12 16 8 C -0.55 -34.14 9.39 25.60 0.24 -33.90 16 9 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 10 C 0.01 0.68 5.46 84.66 0.46 1.14 16 11 N -0.92 -57.02 13.29 21.45 0.28 -56.74 16 12 Si 0.98 46.17 29.54 68.60 2.03 48.20 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 16 C 0.47 21.09 8.43 87.94 0.74 21.83 16 17 O -0.56 -29.96 17.82 -3.10 -0.06 -30.02 16 18 C -0.16 -4.30 6.93 29.65 0.21 -4.10 16 19 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 21 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 22 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.02 0.99 8.04 -2.39 -0.02 0.97 16 27 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.74 16 29 H 0.17 3.26 8.14 -2.39 -0.02 3.25 16 30 H 0.16 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -79.02 266.39 4.98 -74.04 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: 1.11 Total: -0.93 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 3.72 Total: 1.41 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -1.82 Total: -92.70 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.06 Total: -30.02 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -79.02 4.98 -74.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036984755.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.009 kcal (2) G-P(sol) polarization free energy of solvation -79.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds