Wall clock time and date at job start Sun Mar 29 2020 21:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46834 * 2 1 4 4 C 1.50701 * 109.47359 * 179.97438 * 3 2 1 5 5 N 1.27576 * 126.41236 * 0.37045 * 4 3 2 6 6 N 1.39150 * 113.15906 * 180.15201 * 5 4 3 7 7 C 1.46500 * 124.43615 * 179.77007 * 6 5 4 8 8 C 1.50706 * 109.46949 * 269.70426 * 7 6 5 9 9 H 1.07995 * 120.00167 * 359.72205 * 8 7 6 10 10 C 1.37879 * 119.99394 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99350 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00608 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 89.99430 * 12 10 8 14 14 H 1.48494 * 109.47031 * 209.99977 * 12 10 8 15 15 H 1.48504 * 109.46680 * 329.99678 * 12 10 8 16 16 C 1.34954 * 111.12277 * 359.51359 * 6 5 4 17 17 O 1.21298 * 127.49506 * 180.28838 * 16 6 5 18 18 C 1.51440 * 126.41700 * 180.02562 * 4 3 2 19 19 H 1.09004 * 109.46504 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47467 * 300.00394 * 1 2 3 21 21 H 1.08999 * 109.47009 * 60.00651 * 1 2 3 22 22 H 1.09000 * 109.47615 * 240.00335 * 2 1 3 23 23 H 1.08999 * 109.47009 * 119.99349 * 2 1 3 24 24 H 1.09004 * 109.47472 * 59.99255 * 3 2 1 25 25 H 1.09001 * 109.46953 * 299.99995 * 3 2 1 26 26 H 1.09000 * 109.47175 * 149.70452 * 7 6 5 27 27 H 1.09001 * 109.47297 * 29.69960 * 7 6 5 28 28 H 0.97005 * 119.99656 * 180.02562 * 11 10 8 29 29 H 1.09000 * 110.61024 * 61.51409 * 18 4 3 30 30 H 1.08998 * 110.60450 * 298.54472 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4427 0.0006 5 7 4.3043 0.4161 -0.0055 6 7 5.6587 0.7352 0.0004 7 6 6.7422 -0.2509 0.0003 8 6 7.1137 -0.5892 1.4211 9 1 6.5977 -0.1136 2.2420 10 6 8.1159 -1.5021 1.6728 11 7 8.4404 -1.7970 2.9127 12 14 9.0136 -2.3189 0.2529 13 1 10.1942 -1.5002 -0.1229 14 1 9.4613 -3.6737 0.6642 15 1 8.0988 -2.4321 -0.9114 16 6 5.8434 2.0721 0.0008 17 8 6.8978 2.6717 0.0005 18 6 4.4459 2.6614 0.0014 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 1.6765 1.9565 0.8899 25 1 1.6766 1.9564 -0.8900 26 1 7.6099 0.1628 -0.5135 27 1 6.4119 -1.1536 -0.5136 28 1 9.1457 -2.4389 3.0898 29 1 4.2817 3.2588 0.8982 30 1 4.2816 3.2598 -0.8948 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037408448.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:02 Heat of formation + Delta-G solvation = 5.447595 kcal Electronic energy + Delta-G solvation = -13578.225618 eV Core-core repulsion = 11181.627302 eV Total energy + Delta-G solvation = -2396.598316 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.56939 -37.01051 -35.03916 -33.36358 -31.70662 -28.79636 -28.54473 -26.38191 -22.64780 -21.66244 -20.62952 -18.53664 -17.08287 -16.11986 -15.83520 -14.94264 -14.89388 -14.24903 -14.02144 -13.66347 -13.01679 -12.87602 -12.48841 -12.20768 -11.91988 -11.71001 -11.47970 -11.23558 -10.95461 -10.68499 -10.65389 -10.33174 -10.08357 -9.57502 -9.12214 -8.66191 -7.83708 -6.15335 -4.16094 2.04907 3.12645 3.24843 3.29144 3.32250 3.36226 4.19042 4.33057 4.38641 5.03711 5.07027 5.15656 5.20518 5.34395 5.42087 5.58102 5.67386 5.71023 5.90496 6.06775 6.22692 6.33535 6.42525 6.64301 6.92718 7.10056 7.45510 8.30017 8.38363 8.59461 8.87004 9.41687 10.97824 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.032298 B = 0.008514 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.710544 B = 3287.917220 C = 3786.991734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.034 4.034 4 C 0.051 3.949 5 N -0.210 5.210 6 N -0.440 5.440 7 C 0.238 3.762 8 C -0.536 4.536 9 H 0.076 0.924 10 C 0.076 3.924 11 N -0.892 5.892 12 Si 0.876 3.124 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.264 1.264 16 C 0.491 3.509 17 O -0.508 6.508 18 C -0.172 4.172 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.267 0.733 29 H 0.125 0.875 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.408 5.410 -7.425 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.073 4.073 4 C -0.142 4.142 5 N -0.018 5.018 6 N -0.259 5.259 7 C 0.119 3.881 8 C -0.574 4.574 9 H 0.094 0.906 10 C -0.128 4.128 11 N -0.530 5.530 12 Si 0.702 3.298 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.188 1.188 16 C 0.278 3.722 17 O -0.381 6.381 18 C -0.214 4.214 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.428 4.514 -7.319 15.945 hybrid contribution 0.738 0.314 -0.449 0.919 sum -12.690 4.828 -7.768 15.643 Atomic orbital electron populations 1.21782 0.95851 1.01745 1.01498 1.21430 0.95091 0.95697 1.03829 1.20111 0.85149 0.98862 1.03216 1.25119 0.96795 0.90842 1.01450 1.74539 0.90224 1.26909 1.10093 1.50022 1.02366 1.06790 1.66742 1.19771 0.82368 0.86732 0.99196 1.21240 1.20049 1.25370 0.90786 0.90618 1.24817 0.96183 0.95945 0.95817 1.69887 1.30542 1.33914 1.18665 0.86855 0.80766 0.79361 0.82843 1.19726 1.20641 1.18832 1.21204 0.90742 0.83512 0.76763 1.90723 1.31132 1.66319 1.49966 1.22062 0.93826 0.99217 1.06296 0.92661 0.92770 0.92902 0.91259 0.90941 0.89476 0.89611 0.93923 0.93663 0.92320 0.85745 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.33 5.44 -26.73 -0.15 -1.47 16 3 C -0.03 -0.34 5.83 -27.88 -0.16 -0.51 16 4 C 0.05 0.76 7.28 -78.72 -0.57 0.18 16 5 N -0.21 -4.11 11.33 35.54 0.40 -3.71 16 6 N -0.44 -10.16 3.52 -61.06 -0.22 -10.38 16 7 C 0.24 6.15 5.06 -5.19 -0.03 6.12 16 8 C -0.54 -15.99 9.94 -34.44 -0.34 -16.33 16 9 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 10 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 11 N -0.89 -27.79 13.96 55.43 0.77 -27.02 16 12 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 16 C 0.49 10.63 8.43 -10.43 -0.09 10.54 16 17 O -0.51 -12.65 17.81 5.54 0.10 -12.55 16 18 C -0.17 -2.53 6.93 -28.19 -0.20 -2.73 16 19 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 21 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.04 1.11 7.46 -51.93 -0.39 0.72 16 27 H 0.05 1.13 7.20 -51.93 -0.37 0.76 16 28 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 263.45 15.07 3.97 3.97 Total: -1.00 -34.59 263.45 -5.06 -39.65 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -4.16 Total: -3.91 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.26 Total: -2.93 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.96 Total: -41.10 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.10 Total: -12.55 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -34.59 -5.06 -39.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037408448.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.094 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds