Wall clock time and date at job start Sun Mar 29 2020 21:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46834 * 2 1 4 4 C 1.50701 * 109.47359 * 179.97438 * 3 2 1 5 5 N 1.27576 * 126.41236 * 0.37045 * 4 3 2 6 6 N 1.39150 * 113.15906 * 180.15201 * 5 4 3 7 7 C 1.46500 * 124.43615 * 179.77007 * 6 5 4 8 8 C 1.50706 * 109.46949 * 269.70426 * 7 6 5 9 9 H 1.07995 * 120.00167 * 359.72205 * 8 7 6 10 10 C 1.37879 * 119.99394 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99350 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00608 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 89.99430 * 12 10 8 14 14 H 1.48494 * 109.47031 * 209.99977 * 12 10 8 15 15 H 1.48504 * 109.46680 * 329.99678 * 12 10 8 16 16 C 1.34954 * 111.12277 * 359.51359 * 6 5 4 17 17 O 1.21298 * 127.49506 * 180.28838 * 16 6 5 18 18 C 1.51440 * 126.41700 * 180.02562 * 4 3 2 19 19 H 1.09004 * 109.46504 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47467 * 300.00394 * 1 2 3 21 21 H 1.08999 * 109.47009 * 60.00651 * 1 2 3 22 22 H 1.09000 * 109.47615 * 240.00335 * 2 1 3 23 23 H 1.08999 * 109.47009 * 119.99349 * 2 1 3 24 24 H 1.09004 * 109.47472 * 59.99255 * 3 2 1 25 25 H 1.09001 * 109.46953 * 299.99995 * 3 2 1 26 26 H 1.09000 * 109.47175 * 149.70452 * 7 6 5 27 27 H 1.09001 * 109.47297 * 29.69960 * 7 6 5 28 28 H 0.97005 * 119.99656 * 180.02562 * 11 10 8 29 29 H 1.09000 * 110.61024 * 61.51409 * 18 4 3 30 30 H 1.08998 * 110.60450 * 298.54472 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4427 0.0006 5 7 4.3043 0.4161 -0.0055 6 7 5.6587 0.7352 0.0004 7 6 6.7422 -0.2509 0.0003 8 6 7.1137 -0.5892 1.4211 9 1 6.5977 -0.1136 2.2420 10 6 8.1159 -1.5021 1.6728 11 7 8.4404 -1.7970 2.9127 12 14 9.0136 -2.3189 0.2529 13 1 10.1942 -1.5002 -0.1229 14 1 9.4613 -3.6737 0.6642 15 1 8.0988 -2.4321 -0.9114 16 6 5.8434 2.0721 0.0008 17 8 6.8978 2.6717 0.0005 18 6 4.4459 2.6614 0.0014 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 1.6765 1.9565 0.8899 25 1 1.6766 1.9564 -0.8900 26 1 7.6099 0.1628 -0.5135 27 1 6.4119 -1.1536 -0.5136 28 1 9.1457 -2.4389 3.0898 29 1 4.2817 3.2588 0.8982 30 1 4.2816 3.2598 -0.8948 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037408448.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:02 Heat of formation + Delta-G solvation = -19.986436 kcal Electronic energy + Delta-G solvation = -13579.328521 eV Core-core repulsion = 11181.627302 eV Total energy + Delta-G solvation = -2397.701219 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.06464 -38.58675 -36.29722 -35.20915 -33.47013 -30.17797 -30.11709 -27.71089 -24.55523 -22.62917 -22.09918 -19.98550 -19.29749 -17.82435 -17.25076 -16.33663 -16.17176 -15.87989 -15.57269 -15.00005 -14.57008 -14.09836 -14.07035 -13.75321 -13.56981 -13.00998 -12.68827 -12.58270 -12.37194 -12.08790 -11.93457 -11.83597 -11.65443 -11.44948 -10.93581 -10.65272 -9.52089 -8.44268 -6.53055 0.73909 1.28218 1.31883 1.41542 1.58756 1.77484 2.23699 2.85643 2.96840 3.13454 3.91809 4.28500 4.29852 4.37828 4.41862 4.56581 4.64740 4.77523 4.92579 4.94276 5.07644 5.24658 5.30843 5.32831 5.44506 5.55283 5.63053 6.07405 6.45948 6.77542 7.00800 7.12564 8.72955 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.032298 B = 0.008514 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.710544 B = 3287.917220 C = 3786.991734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C -0.033 4.033 4 C 0.094 3.906 5 N -0.268 5.268 6 N -0.464 5.464 7 C 0.247 3.753 8 C -0.551 4.551 9 H 0.022 0.978 10 C 0.015 3.985 11 N -0.939 5.939 12 Si 0.953 3.047 13 H -0.265 1.265 14 H -0.268 1.268 15 H -0.242 1.242 16 C 0.467 3.533 17 O -0.560 6.560 18 C -0.156 4.156 19 H 0.050 0.950 20 H 0.064 0.936 21 H 0.071 0.929 22 H 0.054 0.946 23 H 0.042 0.958 24 H 0.118 0.882 25 H 0.129 0.871 26 H 0.037 0.963 27 H 0.053 0.947 28 H 0.273 0.727 29 H 0.155 0.845 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.587 6.304 -9.341 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C -0.071 4.071 4 C -0.098 4.098 5 N -0.075 5.075 6 N -0.281 5.281 7 C 0.127 3.873 8 C -0.589 4.589 9 H 0.041 0.959 10 C -0.184 4.184 11 N -0.578 5.578 12 Si 0.774 3.226 13 H -0.190 1.190 14 H -0.193 1.193 15 H -0.165 1.165 16 C 0.256 3.744 17 O -0.438 6.438 18 C -0.197 4.197 19 H 0.069 0.931 20 H 0.083 0.917 21 H 0.090 0.910 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.136 0.864 25 H 0.147 0.853 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.172 0.828 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.667 5.408 -9.235 18.973 hybrid contribution 1.226 0.125 0.244 1.256 sum -14.441 5.533 -8.991 17.889 Atomic orbital electron populations 1.21731 0.93491 1.02043 1.02964 1.21412 0.97088 0.96062 1.01721 1.20498 0.81105 0.98873 1.06664 1.26201 0.98689 0.89767 0.95178 1.74662 0.88600 1.28734 1.15505 1.50025 1.03673 1.06884 1.67479 1.19357 0.83768 0.87981 0.96243 1.21408 1.20264 1.25602 0.91659 0.95913 1.25895 0.96867 0.96397 0.99230 1.70037 1.31497 1.34892 1.21409 0.85644 0.79420 0.78350 0.79188 1.18972 1.19253 1.16495 1.22390 0.92996 0.83336 0.75682 1.90672 1.33570 1.67084 1.52500 1.22179 0.88589 0.99212 1.09745 0.93123 0.91655 0.90987 0.92757 0.93940 0.86355 0.85284 0.94474 0.92906 0.91769 0.82760 0.81247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.19 16 2 C -0.12 -2.41 5.44 30.60 0.17 -2.24 16 3 C -0.03 -0.50 5.83 29.85 0.17 -0.33 16 4 C 0.09 2.50 7.28 46.83 0.34 2.84 16 5 N -0.27 -10.40 11.33 -40.84 -0.46 -10.86 16 6 N -0.46 -21.81 3.52 -465.38 -1.64 -23.45 16 7 C 0.25 13.14 5.06 85.63 0.43 13.57 16 8 C -0.55 -34.53 9.94 25.60 0.25 -34.28 16 9 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 10 C 0.02 0.92 5.47 84.66 0.46 1.39 16 11 N -0.94 -60.65 13.96 21.45 0.30 -60.35 16 12 Si 0.95 45.07 27.47 68.60 1.88 46.96 16 13 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 15 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 16 C 0.47 20.25 8.43 87.94 0.74 20.99 16 17 O -0.56 -28.71 17.81 -3.09 -0.05 -28.76 16 18 C -0.16 -4.08 6.93 29.65 0.21 -3.87 16 19 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 20 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 21 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.04 1.98 7.46 -2.39 -0.02 1.97 16 27 H 0.05 2.67 7.20 -2.39 -0.02 2.65 16 28 H 0.27 16.18 8.31 -92.70 -0.77 15.41 16 29 H 0.16 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.17 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -82.39 263.45 4.58 -77.81 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 1.06 Total: 1.77 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 3.49 Total: -3.12 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -1.80 Total: -94.66 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Total: -82.39 4.58 -77.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037408448.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.824 kcal (2) G-P(sol) polarization free energy of solvation -82.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds