Wall clock time and date at job start Sun Mar 29 2020 21:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37443 * 123.35900 * 2 1 4 4 C 1.33855 * 115.10432 * 179.81301 * 3 2 1 5 5 S 1.70613 * 110.97095 * 0.44572 * 4 3 2 6 6 C 1.36764 * 123.35882 * 180.29733 * 2 1 3 7 7 C 1.46459 * 125.46383 * 359.95671 * 6 2 1 8 8 O 1.21744 * 120.00328 * 359.97438 * 7 6 2 9 9 N 1.34776 * 119.99918 * 180.02562 * 7 6 2 10 10 C 1.36887 * 120.00392 * 179.97438 * 9 7 6 11 11 H 1.08007 * 119.99425 * 0.02562 * 10 9 7 12 12 C 1.39000 * 120.00672 * 179.97438 * 10 9 7 13 13 N 1.31406 * 119.99699 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00436 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 89.99961 * 14 12 10 16 16 H 1.48503 * 109.47399 * 210.00657 * 14 12 10 17 17 H 1.48505 * 109.47129 * 330.00045 * 14 12 10 18 18 H 1.09001 * 109.46953 * 269.70254 * 1 2 3 19 19 H 1.09000 * 109.47318 * 29.69852 * 1 2 3 20 20 H 1.09000 * 109.47161 * 149.70482 * 1 2 3 21 21 H 1.08001 * 122.44735 * 0.02562 * 3 2 1 22 22 H 1.07997 * 124.51417 * 180.19361 * 4 3 2 23 23 H 0.97006 * 120.00372 * 359.97438 * 9 7 6 24 24 H 0.96998 * 119.99966 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2628 1.1480 0.0000 4 6 3.5875 0.9558 0.0040 5 16 3.9631 -0.7084 -0.0044 6 6 2.2591 -1.1423 -0.0059 7 6 1.7300 -2.5080 -0.0121 8 8 0.5270 -2.6948 -0.0118 9 7 2.5750 -3.5580 -0.0171 10 6 2.0805 -4.8344 -0.0224 11 1 1.0133 -5.0001 -0.0229 12 6 2.9519 -5.9174 -0.0281 13 7 4.2504 -5.7158 -0.0280 14 14 2.2772 -7.6591 -0.0360 15 1 2.0975 -8.1141 -1.4381 16 1 3.2294 -8.5621 0.6593 17 1 0.9681 -7.6861 0.6648 18 1 -0.3633 -0.0053 1.0277 19 1 -0.3634 0.8927 -0.5091 20 1 -0.3633 -0.8873 -0.5184 21 1 1.8202 2.1331 0.0004 22 1 4.3208 1.7486 0.0075 23 1 3.5335 -3.4092 -0.0170 24 1 4.8585 -6.4715 -0.0316 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037714284.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:56 Heat of formation + Delta-G solvation = -35.020215 kcal Electronic energy + Delta-G solvation = -11471.152758 eV Core-core repulsion = 9282.000740 eV Total energy + Delta-G solvation = -2189.152018 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.42791 -38.59162 -36.05865 -33.42795 -31.68272 -29.40406 -26.77071 -24.33559 -22.29555 -20.44585 -19.02757 -18.89150 -16.95929 -16.52233 -15.92078 -15.79113 -15.52972 -14.43649 -14.32941 -14.01932 -13.54641 -13.14604 -13.00989 -12.91726 -12.56104 -12.51673 -12.11984 -11.69258 -11.61209 -10.45891 -10.16110 -9.65553 -9.33428 -8.56520 -6.02565 -0.30475 0.64778 1.11380 1.36855 1.40305 1.54215 1.60269 2.25549 2.34889 3.12131 3.20344 4.08655 4.26444 4.39362 4.55559 4.75256 4.85688 5.08605 5.17424 5.32112 5.49498 5.66429 5.92974 6.45975 6.99242 7.38319 7.93716 8.61136 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.050982 B = 0.009088 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.079367 B = 3080.280601 C = 3614.214852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.054 4.054 3 C -0.147 4.147 4 C -0.224 4.224 5 S 0.181 5.819 6 C -0.280 4.280 7 C 0.497 3.503 8 O -0.618 6.618 9 N -0.559 5.559 10 C -0.338 4.338 11 H 0.087 0.913 12 C -0.012 4.012 13 N -0.913 5.913 14 Si 1.002 2.998 15 H -0.268 1.268 16 H -0.267 1.267 17 H -0.270 1.270 18 H 0.069 0.931 19 H 0.092 0.908 20 H 0.058 0.942 21 H 0.176 0.824 22 H 0.205 0.795 23 H 0.394 0.606 24 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 11.206 0.008 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.070 4.070 3 C -0.178 4.178 4 C -0.361 4.361 5 S 0.448 5.552 6 C -0.400 4.400 7 C 0.286 3.714 8 O -0.508 6.508 9 N -0.193 5.193 10 C -0.467 4.467 11 H 0.105 0.895 12 C -0.213 4.213 13 N -0.553 5.553 14 Si 0.825 3.175 15 H -0.193 1.193 16 H -0.191 1.191 17 H -0.195 1.195 18 H 0.088 0.912 19 H 0.111 0.889 20 H 0.077 0.923 21 H 0.193 0.807 22 H 0.222 0.778 23 H 0.228 0.772 24 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.467 10.101 0.006 10.398 hybrid contribution -0.982 -0.090 0.017 0.986 sum 1.485 10.011 0.022 10.120 Atomic orbital electron populations 1.20600 0.88932 1.03265 1.02582 1.19861 0.98322 0.90900 0.97914 1.20096 0.92586 0.99561 1.05507 1.25614 1.01125 1.01040 1.08367 1.83153 1.03318 0.99940 1.68797 1.24607 0.98650 0.97126 1.19609 1.17224 0.86355 0.83847 0.83950 1.90549 1.15702 1.85766 1.58776 1.41878 1.08629 1.05386 1.63431 1.19814 0.94333 0.82399 1.50175 0.89479 1.26238 0.95214 1.04265 0.95550 1.69677 1.02557 1.34507 1.48539 0.84797 0.78125 0.75692 0.78924 1.19273 1.19119 1.19464 0.91234 0.88936 0.92287 0.80683 0.77819 0.77195 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.21 9.55 71.24 0.68 -2.53 14 2 C -0.05 -1.93 5.91 -20.40 -0.12 -2.05 14 3 C -0.15 -3.87 9.97 21.08 0.21 -3.66 14 4 C -0.22 -5.49 10.92 66.82 0.73 -4.76 14 5 S 0.18 5.93 22.15 -56.49 -1.25 4.68 14 6 C -0.28 -11.87 6.45 24.07 0.16 -11.71 14 7 C 0.50 26.48 7.72 86.38 0.67 27.14 14 8 O -0.62 -36.18 13.82 -4.49 -0.06 -36.24 14 9 N -0.56 -31.00 5.27 -310.81 -1.64 -32.64 14 10 C -0.34 -19.81 9.68 84.09 0.81 -19.00 14 11 H 0.09 5.35 7.15 -2.91 -0.02 5.33 14 12 C -0.01 -0.63 5.50 84.94 0.47 -0.17 14 13 N -0.91 -49.91 13.05 21.67 0.28 -49.62 14 14 Si 1.00 42.88 29.55 68.60 2.03 44.91 14 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 14 16 H -0.27 -10.69 7.11 99.48 0.71 -9.98 14 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 14 18 H 0.07 2.26 8.14 -2.39 -0.02 2.24 14 19 H 0.09 2.32 8.14 -2.39 -0.02 2.30 14 20 H 0.06 2.44 6.02 -2.39 -0.01 2.43 14 21 H 0.18 3.23 8.06 -2.91 -0.02 3.21 14 22 H 0.20 3.21 8.06 -2.91 -0.02 3.19 14 23 H 0.39 20.92 7.00 -92.70 -0.65 20.27 14 24 H 0.28 14.26 8.31 -92.71 -0.77 13.49 14 Total: -1.00 -67.91 231.75 3.54 -64.37 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.58 Total: 21.27 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 3.60 Total: -16.73 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -1.36 Total: -82.26 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.06 Total: -36.24 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.25 Total: 4.68 kcal Total: -67.91 3.54 -64.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714284.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.349 kcal (2) G-P(sol) polarization free energy of solvation -67.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds