Wall clock time and date at job start Sun Mar 29 2020 21:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46491 * 120.00083 * 2 1 4 4 C 1.50698 * 109.47244 * 269.99722 * 3 2 1 5 5 H 1.08004 * 120.00345 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00179 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00020 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99875 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47204 * 89.99914 * 8 6 4 10 10 H 1.48502 * 109.46709 * 210.00131 * 8 6 4 11 11 H 1.48497 * 109.47038 * 329.99512 * 8 6 4 12 12 C 1.38997 * 119.99641 * 180.02562 * 2 1 3 13 13 C 1.39071 * 119.68686 * 184.72799 * 12 2 1 14 14 C 1.38381 * 119.15570 * 180.29734 * 13 12 2 15 15 C 1.38749 * 118.53684 * 359.97438 * 14 13 12 16 16 C 1.38374 * 119.30394 * 359.97438 * 15 14 13 17 17 F 1.35102 * 119.60421 * 180.02562 * 16 15 14 18 18 N 1.32133 * 120.79488 * 0.03087 * 16 15 14 19 19 H 1.08998 * 109.47206 * 269.99886 * 1 2 3 20 20 H 1.09004 * 109.47208 * 30.00049 * 1 2 3 21 21 H 1.09003 * 109.47381 * 149.99468 * 1 2 3 22 22 H 1.08996 * 109.47651 * 30.00008 * 3 2 1 23 23 H 1.09007 * 109.47227 * 149.99885 * 3 2 1 24 24 H 0.97003 * 119.99678 * 180.02562 * 7 6 4 25 25 H 1.07997 * 120.42283 * 0.25136 * 13 12 2 26 26 H 1.08000 * 120.72851 * 179.97438 * 14 13 12 27 27 H 1.08004 * 120.35137 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2418 6 6 3.1261 2.8779 -1.6727 7 7 3.3449 3.2577 -2.9127 8 14 3.7330 3.9292 -0.2529 9 1 5.1065 3.5081 0.1231 10 1 3.7478 5.3559 -0.6645 11 1 2.8270 3.7593 0.9114 12 6 2.1599 -1.2038 -0.0005 13 6 3.5470 -1.1984 0.0990 14 6 4.2282 -2.4029 0.0912 15 6 3.4970 -3.5772 -0.0158 16 6 2.1181 -3.5102 -0.1103 17 9 1.4001 -4.6499 -0.2143 18 7 1.4952 -2.3450 -0.1003 19 1 -0.3633 0.0000 1.0276 20 1 -0.3634 0.8900 -0.5139 21 1 -0.3634 -0.8899 -0.5139 22 1 1.6085 2.0283 0.5138 23 1 3.1499 1.1383 0.5139 24 1 3.8218 4.0837 -3.0899 25 1 4.0858 -0.2660 0.1807 26 1 5.3053 -2.4283 0.1667 27 1 3.9987 -4.5336 -0.0244 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040711579.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:51 Heat of formation + Delta-G solvation = 7.117462 kcal Electronic energy + Delta-G solvation = -13426.864585 eV Core-core repulsion = 10906.878374 eV Total energy + Delta-G solvation = -2519.986210 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.62069 -39.65413 -36.00174 -32.78740 -31.99958 -29.65235 -28.56449 -25.44540 -23.29395 -22.44747 -20.67060 -17.50028 -17.06786 -16.77832 -15.64978 -15.62865 -15.10159 -14.52812 -14.19523 -13.60502 -13.00541 -12.82857 -12.49419 -12.32626 -12.05767 -11.66898 -11.37008 -10.94131 -10.65411 -10.37230 -9.77426 -9.56460 -9.19351 -8.96045 -8.74413 -6.89941 -6.23494 -4.25411 1.58244 1.79358 3.15097 3.22995 3.23600 3.47470 4.22427 4.23749 4.30940 5.01922 5.08911 5.41422 5.52718 5.67724 5.94825 6.03359 6.20140 6.28357 6.39405 6.46676 6.59169 6.74158 7.03858 7.38504 7.47344 8.03629 8.27323 8.49491 8.83585 9.34614 10.89367 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.044747 B = 0.008745 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.585786 B = 3200.997066 C = 3435.068772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.581 5.581 3 C 0.221 3.779 4 C -0.542 4.542 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.264 1.264 12 C 0.450 3.550 13 C -0.236 4.236 14 C -0.015 4.015 15 C -0.277 4.277 16 C 0.346 3.654 17 F -0.124 7.124 18 N -0.588 5.588 19 H 0.039 0.961 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.037 0.963 23 H 0.032 0.968 24 H 0.267 0.733 25 H 0.145 0.855 26 H 0.137 0.863 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.391 -7.955 7.513 10.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.289 5.289 3 C 0.100 3.900 4 C -0.580 4.580 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.528 5.528 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.189 1.189 12 C 0.212 3.788 13 C -0.261 4.261 14 C -0.040 4.040 15 C -0.302 4.302 16 C 0.192 3.808 17 F -0.103 7.103 18 N -0.313 5.313 19 H 0.058 0.942 20 H 0.088 0.912 21 H 0.089 0.911 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.163 0.837 26 H 0.154 0.846 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.575 -7.578 7.332 10.561 hybrid contribution 1.026 0.429 0.487 1.214 sum 0.451 -7.150 7.820 10.605 Atomic orbital electron populations 1.21501 0.79782 1.02930 1.00170 1.46755 1.05638 1.02785 1.73714 1.19833 0.92046 0.79708 0.98379 1.21418 1.37608 1.07699 0.91300 0.90424 1.24881 0.95230 0.97106 0.95581 1.69894 1.40750 1.23458 1.18717 0.86909 0.79945 0.80338 0.82914 1.19765 1.20798 1.18893 1.17884 0.88143 0.84681 0.88066 1.21605 0.93418 1.00036 1.11088 1.21082 0.99879 0.90825 0.92242 1.21238 0.92299 1.00393 1.16280 1.17641 0.86380 0.80907 0.95905 1.91560 1.79588 1.46128 1.93047 1.66247 1.42048 0.97148 1.25868 0.94224 0.91200 0.91113 0.94479 0.95054 0.92313 0.83686 0.84558 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 10.50 59.85 0.63 2.44 15 2 N -0.58 -12.22 2.97 -183.12 -0.54 -12.77 15 3 C 0.22 4.97 4.07 -5.20 -0.02 4.95 15 4 C -0.54 -14.56 9.94 -34.44 -0.34 -14.90 15 5 H 0.08 2.37 8.06 -52.48 -0.42 1.94 15 6 C 0.08 2.06 5.47 -17.82 -0.10 1.96 15 7 N -0.89 -26.12 13.96 55.43 0.77 -25.34 15 8 Si 0.87 19.72 27.47 -169.99 -4.67 15.05 15 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 11 H -0.26 -5.65 6.54 56.52 0.37 -5.28 15 12 C 0.45 9.22 7.37 -155.01 -1.14 8.07 15 13 C -0.24 -4.39 9.27 -39.22 -0.36 -4.75 15 14 C -0.01 -0.23 10.16 -39.34 -0.40 -0.63 15 15 C -0.28 -4.24 10.08 -39.34 -0.40 -4.63 15 16 C 0.35 6.18 8.40 -17.37 -0.15 6.04 15 17 F -0.12 -2.09 17.29 2.25 0.04 -2.06 15 18 N -0.59 -11.79 9.09 -12.78 -0.12 -11.91 15 19 H 0.04 0.64 8.14 -51.93 -0.42 0.21 15 20 H 0.07 1.25 8.07 -51.93 -0.42 0.83 15 21 H 0.07 1.29 7.30 -51.93 -0.38 0.91 15 22 H 0.04 0.81 7.13 -51.93 -0.37 0.44 15 23 H 0.03 0.68 5.41 -51.93 -0.28 0.40 15 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 25 H 0.15 2.72 6.02 -52.49 -0.32 2.40 15 26 H 0.14 1.60 8.06 -52.49 -0.42 1.18 15 27 H 0.13 1.63 8.06 -52.48 -0.42 1.21 15 LS Contribution 241.34 15.07 3.64 3.64 Total: -1.00 -29.46 241.34 -5.78 -35.24 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -2.62 Total: -0.41 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.28 Total: -1.45 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.11 Total: -50.02 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.05 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.46 -5.78 -35.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040711579.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.361 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds