Wall clock time and date at job start Sun Mar 29 2020 21:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46491 * 120.00083 * 2 1 4 4 C 1.50698 * 109.47244 * 269.99722 * 3 2 1 5 5 H 1.08004 * 120.00345 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00179 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00020 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99875 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47204 * 89.99914 * 8 6 4 10 10 H 1.48502 * 109.46709 * 210.00131 * 8 6 4 11 11 H 1.48497 * 109.47038 * 329.99512 * 8 6 4 12 12 C 1.38997 * 119.99641 * 180.02562 * 2 1 3 13 13 C 1.39071 * 119.68686 * 184.72799 * 12 2 1 14 14 C 1.38381 * 119.15570 * 180.29734 * 13 12 2 15 15 C 1.38749 * 118.53684 * 359.97438 * 14 13 12 16 16 C 1.38374 * 119.30394 * 359.97438 * 15 14 13 17 17 F 1.35102 * 119.60421 * 180.02562 * 16 15 14 18 18 N 1.32133 * 120.79488 * 0.03087 * 16 15 14 19 19 H 1.08998 * 109.47206 * 269.99886 * 1 2 3 20 20 H 1.09004 * 109.47208 * 30.00049 * 1 2 3 21 21 H 1.09003 * 109.47381 * 149.99468 * 1 2 3 22 22 H 1.08996 * 109.47651 * 30.00008 * 3 2 1 23 23 H 1.09007 * 109.47227 * 149.99885 * 3 2 1 24 24 H 0.97003 * 119.99678 * 180.02562 * 7 6 4 25 25 H 1.07997 * 120.42283 * 0.25136 * 13 12 2 26 26 H 1.08000 * 120.72851 * 179.97438 * 14 13 12 27 27 H 1.08004 * 120.35137 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2418 6 6 3.1261 2.8779 -1.6727 7 7 3.3449 3.2577 -2.9127 8 14 3.7330 3.9292 -0.2529 9 1 5.1065 3.5081 0.1231 10 1 3.7478 5.3559 -0.6645 11 1 2.8270 3.7593 0.9114 12 6 2.1599 -1.2038 -0.0005 13 6 3.5470 -1.1984 0.0990 14 6 4.2282 -2.4029 0.0912 15 6 3.4970 -3.5772 -0.0158 16 6 2.1181 -3.5102 -0.1103 17 9 1.4001 -4.6499 -0.2143 18 7 1.4952 -2.3450 -0.1003 19 1 -0.3633 0.0000 1.0276 20 1 -0.3634 0.8900 -0.5139 21 1 -0.3634 -0.8899 -0.5139 22 1 1.6085 2.0283 0.5138 23 1 3.1499 1.1383 0.5139 24 1 3.8218 4.0837 -3.0899 25 1 4.0858 -0.2660 0.1807 26 1 5.3053 -2.4283 0.1667 27 1 3.9987 -4.5336 -0.0244 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040711579.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:50 Heat of formation + Delta-G solvation = -11.177309 kcal Electronic energy + Delta-G solvation = -13427.657905 eV Core-core repulsion = 10906.878374 eV Total energy + Delta-G solvation = -2520.779531 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.95863 -41.06981 -37.55121 -34.73668 -33.46260 -31.07768 -30.35349 -26.98315 -24.95777 -23.88159 -22.24321 -19.10280 -18.92426 -18.20705 -17.03239 -17.01259 -16.69664 -16.15618 -15.74380 -15.13889 -14.62679 -14.25228 -14.10836 -13.73505 -13.61740 -13.20179 -12.99024 -12.63225 -12.30577 -12.05741 -11.72780 -11.01286 -10.82138 -10.60047 -10.44734 -8.41580 -8.30942 -6.40201 0.20161 0.46616 1.40145 1.41696 1.52013 2.00357 2.33669 2.83017 2.91284 3.02436 3.78266 4.04009 4.28458 4.31821 4.55382 4.61283 4.73125 4.81476 4.92916 4.96858 5.05314 5.35777 5.41876 5.71013 5.86765 6.28041 6.53973 6.63909 6.98786 7.26346 8.85226 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.044747 B = 0.008745 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.585786 B = 3200.997066 C = 3435.068772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.600 5.600 3 C 0.232 3.768 4 C -0.545 4.545 5 H 0.021 0.979 6 C 0.016 3.984 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.258 1.258 10 H -0.285 1.285 11 H -0.239 1.239 12 C 0.423 3.577 13 C -0.255 4.255 14 C -0.001 4.001 15 C -0.255 4.255 16 C 0.325 3.675 17 F -0.122 7.122 18 N -0.611 5.611 19 H 0.062 0.938 20 H 0.064 0.936 21 H 0.062 0.938 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.269 0.731 25 H 0.141 0.859 26 H 0.181 0.819 27 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 -8.609 9.642 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.310 5.310 3 C 0.110 3.890 4 C -0.584 4.584 5 H 0.040 0.960 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.771 3.229 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.162 1.162 12 C 0.188 3.812 13 C -0.281 4.281 14 C -0.026 4.026 15 C -0.279 4.279 16 C 0.171 3.829 17 F -0.101 7.101 18 N -0.337 5.337 19 H 0.080 0.920 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.158 0.842 26 H 0.198 0.802 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.868 -8.291 9.474 12.620 hybrid contribution 0.567 0.452 -0.270 0.774 sum 1.435 -7.839 9.204 12.175 Atomic orbital electron populations 1.21521 0.78908 1.02249 1.01375 1.46731 1.06339 1.02659 1.75243 1.19595 0.93208 0.80806 0.95380 1.21584 1.37220 1.07202 0.92347 0.96020 1.25881 0.95205 0.98544 0.98652 1.70070 1.42332 1.24393 1.21709 0.85698 0.80253 0.77518 0.79438 1.18199 1.21047 1.16228 1.18136 0.89050 0.84599 0.89457 1.21773 0.92826 1.01363 1.12093 1.21587 1.01924 0.89358 0.89752 1.21689 0.91055 1.02177 1.13024 1.18043 0.87612 0.80467 0.96783 1.91564 1.79783 1.45707 1.93096 1.66126 1.43234 0.97862 1.26467 0.91964 0.91765 0.91873 0.93349 0.93401 0.92175 0.84168 0.80192 0.80955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.76 10.50 127.77 1.34 5.11 15 2 N -0.60 -25.30 2.97 -733.26 -2.18 -27.48 15 3 C 0.23 10.27 4.07 85.63 0.35 10.62 15 4 C -0.54 -30.02 9.94 25.60 0.25 -29.77 15 5 H 0.02 1.39 8.06 -2.91 -0.02 1.37 15 6 C 0.02 0.86 5.47 84.66 0.46 1.33 15 7 N -0.95 -57.05 13.96 21.45 0.30 -56.75 15 8 Si 0.95 39.94 27.47 68.60 1.88 41.83 15 9 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 11 H -0.24 -9.03 6.54 99.48 0.65 -8.38 15 12 C 0.42 17.22 7.37 133.04 0.98 18.20 15 13 C -0.26 -9.09 9.27 22.50 0.21 -8.88 15 14 C 0.00 -0.03 10.16 22.43 0.23 0.19 15 15 C -0.26 -6.88 10.08 22.42 0.23 -6.65 15 16 C 0.32 11.06 8.40 84.68 0.71 11.77 15 17 F -0.12 -3.95 17.29 44.97 0.78 -3.17 15 18 N -0.61 -24.31 9.09 -194.33 -1.77 -26.07 15 19 H 0.06 1.96 8.14 -2.39 -0.02 1.94 15 20 H 0.06 2.35 8.07 -2.39 -0.02 2.34 15 21 H 0.06 2.36 7.30 -2.39 -0.02 2.34 15 22 H 0.05 2.03 7.13 -2.39 -0.02 2.02 15 23 H 0.05 1.97 5.41 -2.38 -0.01 1.96 15 24 H 0.27 15.07 8.31 -92.71 -0.77 14.30 15 25 H 0.14 5.05 6.02 -2.91 -0.02 5.04 15 26 H 0.18 3.27 8.06 -2.91 -0.02 3.25 15 27 H 0.17 3.30 8.06 -2.91 -0.02 3.27 15 Total: -1.00 -66.01 241.34 4.90 -61.11 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.12 Total: 8.63 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 4.76 Total: 1.91 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -3.65 Total: -110.30 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.78 Total: -3.17 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.88 Total: 41.83 kcal Total: -66.01 4.90 -61.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040711579.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.937 kcal (2) G-P(sol) polarization free energy of solvation -66.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds