Wall clock time and date at job start Sun Mar 29 2020 22:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47096 * 2 1 4 4 C 1.36934 * 120.00338 * 269.76347 * 3 2 1 5 5 H 1.08001 * 119.99319 * 322.05070 * 4 3 2 6 6 C 1.38812 * 120.00303 * 142.04606 * 4 3 2 7 7 N 1.31618 * 119.99529 * 157.05487 * 6 4 3 8 8 Si 1.86798 * 120.00073 * 337.05844 * 6 4 3 9 9 H 1.48507 * 109.46947 * 95.69796 * 8 6 4 10 10 H 1.48499 * 109.46996 * 215.69515 * 8 6 4 11 11 H 1.48497 * 109.47292 * 335.69842 * 8 6 4 12 12 C 1.46505 * 119.99763 * 89.75994 * 3 2 1 13 13 C 1.50701 * 109.47175 * 90.00534 * 12 3 2 14 14 C 1.33382 * 125.20360 * 89.99607 * 13 12 3 15 15 C 1.38434 * 114.91905 * 180.02562 * 14 13 12 16 16 C 1.33391 * 114.91799 * 0.25415 * 15 14 13 17 17 S 1.75887 * 109.59584 * 359.62773 * 16 15 14 18 18 H 1.09003 * 109.47626 * 299.99621 * 1 2 3 19 19 H 1.08994 * 109.47160 * 60.00038 * 1 2 3 20 20 H 1.09002 * 109.46950 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47783 * 239.99848 * 2 1 3 22 22 H 1.09008 * 109.47319 * 119.99438 * 2 1 3 23 23 H 0.97001 * 119.99286 * 180.02562 * 7 6 4 24 24 H 1.09000 * 109.47387 * 329.99791 * 12 3 2 25 25 H 1.09000 * 109.47064 * 210.00473 * 12 3 2 26 26 H 1.07996 * 122.54549 * 0.05849 * 14 13 12 27 27 H 1.08000 * 122.53609 * 179.97438 * 15 14 13 28 28 H 1.07996 * 125.19900 * 179.75439 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2511 2.0252 -1.1858 5 1 2.6738 1.4846 -2.0198 6 6 1.9439 3.3726 -1.3160 7 7 2.5473 4.0995 -2.2325 8 14 0.6743 4.1541 -0.1905 9 1 1.3609 4.8005 0.9567 10 1 -0.0952 5.1750 -0.9459 11 1 -0.2520 3.1081 0.3125 12 6 2.2574 2.0736 1.2688 13 6 3.6790 1.8375 1.7097 14 6 4.7211 2.6062 1.3898 15 6 5.9342 2.1909 1.9114 16 6 5.8780 1.0819 2.6506 17 16 4.2179 0.5057 2.7244 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8901 23 1 2.3328 5.0412 -2.3231 24 1 1.5736 1.6906 2.0263 25 1 2.0909 3.1426 1.1364 26 1 4.6256 3.4862 0.7711 27 1 6.8569 2.7218 1.7297 28 1 6.7224 0.6112 3.1320 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042227019.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:20 Heat of formation + Delta-G solvation = 54.432618 kcal Electronic energy + Delta-G solvation = -12119.450456 eV Core-core repulsion = 10070.010499 eV Total energy + Delta-G solvation = -2049.439957 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.49164 -35.87107 -31.95766 -30.84467 -28.54071 -25.61539 -23.78931 -22.52616 -20.23259 -18.55810 -17.33743 -16.00928 -15.30490 -14.72827 -14.53630 -13.44060 -13.10285 -12.58888 -12.39237 -12.26806 -11.85178 -11.68925 -11.44354 -11.32297 -10.85919 -10.52230 -10.37446 -10.05242 -9.88356 -9.62422 -8.57503 -8.02590 -7.88621 -6.93450 -6.05627 -3.45265 1.62440 2.24856 2.60273 3.25895 3.40573 3.45513 3.48293 4.46945 5.04579 5.28225 5.48890 5.64396 5.90865 5.95926 6.11850 6.22448 6.26530 6.28996 6.46474 6.50359 6.78303 6.80063 7.03188 7.06507 7.19280 7.98728 8.34651 8.90880 9.64288 10.04983 11.09505 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.013524 C = 0.010967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.052228 B = 2069.854955 C = 2552.433866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.144 3.856 3 N -0.592 5.592 4 C -0.264 4.264 5 H 0.079 0.921 6 C 0.040 3.960 7 N -0.893 5.893 8 Si 0.867 3.133 9 H -0.284 1.284 10 H -0.299 1.299 11 H -0.264 1.264 12 C 0.196 3.804 13 C -0.146 4.146 14 C -0.144 4.144 15 C -0.121 4.121 16 C -0.237 4.237 17 S 0.048 5.952 18 H 0.041 0.959 19 H 0.057 0.943 20 H 0.040 0.960 21 H 0.053 0.947 22 H 0.038 0.962 23 H 0.264 0.736 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -5.211 9.183 10.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 N -0.313 5.313 4 C -0.393 4.393 5 H 0.096 0.904 6 C -0.162 4.162 7 N -0.533 5.533 8 Si 0.696 3.304 9 H -0.212 1.212 10 H -0.227 1.227 11 H -0.188 1.188 12 C 0.068 3.932 13 C -0.266 4.266 14 C -0.174 4.174 15 C -0.152 4.152 16 C -0.373 4.373 17 S 0.309 5.691 18 H 0.060 0.940 19 H 0.076 0.924 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.157 0.843 27 H 0.148 0.852 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.055 -6.286 9.746 11.646 hybrid contribution 0.195 1.769 -0.201 1.791 sum 1.250 -4.517 9.545 10.634 Atomic orbital electron populations 1.22316 0.99340 0.99360 1.01731 1.20894 0.91870 0.86120 0.99272 1.44195 1.74088 1.11631 1.01418 1.18771 1.36673 0.93438 0.90421 0.90364 1.25453 0.97583 0.96736 0.96394 1.69891 1.40488 1.06947 1.36009 0.87074 0.84056 0.79053 0.80206 1.21173 1.22650 1.18846 1.19927 0.87067 0.98040 0.88168 1.25916 1.02777 0.97032 1.00904 1.20147 0.91292 1.03027 1.02910 1.20179 0.98899 0.97000 0.99156 1.25309 0.99535 1.02580 1.09842 1.83918 1.01970 1.31782 1.51460 0.94005 0.92392 0.94077 0.92856 0.94344 0.92620 0.93114 0.90905 0.84255 0.85156 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 10.24 37.16 0.38 -2.70 15 2 C 0.14 2.89 6.39 -4.04 -0.03 2.87 15 3 N -0.59 -13.97 2.05 -174.60 -0.36 -14.33 15 4 C -0.26 -7.26 9.90 -15.06 -0.15 -7.40 15 5 H 0.08 2.35 8.06 -52.49 -0.42 1.92 15 6 C 0.04 1.11 5.29 -17.43 -0.09 1.02 15 7 N -0.89 -26.63 13.97 55.49 0.78 -25.85 15 8 Si 0.87 21.56 25.10 -169.99 -4.27 17.29 15 9 H -0.28 -6.87 6.68 56.52 0.38 -6.49 15 10 H -0.30 -7.56 7.11 56.52 0.40 -7.16 15 11 H -0.26 -6.40 7.11 56.52 0.40 -5.99 15 12 C 0.20 4.31 5.00 -5.19 -0.03 4.29 15 13 C -0.15 -3.00 6.09 -36.00 -0.22 -3.22 15 14 C -0.14 -2.94 10.05 -41.21 -0.41 -3.36 15 15 C -0.12 -2.09 10.18 -41.20 -0.42 -2.51 15 16 C -0.24 -3.77 11.23 29.04 0.33 -3.45 15 17 S 0.05 0.81 23.33 -107.50 -2.51 -1.69 15 18 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 19 H 0.06 1.16 8.14 -51.93 -0.42 0.73 15 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.05 1.08 8.04 -51.93 -0.42 0.66 15 22 H 0.04 0.70 8.07 -51.92 -0.42 0.28 15 23 H 0.26 7.46 8.31 -40.82 -0.34 7.13 15 24 H 0.05 1.01 8.07 -51.93 -0.42 0.59 15 25 H 0.07 1.73 3.37 -51.93 -0.18 1.56 15 26 H 0.14 3.06 8.06 -52.49 -0.42 2.64 15 27 H 0.13 1.92 8.06 -52.49 -0.42 1.49 15 28 H 0.15 1.94 8.06 -52.49 -0.42 1.52 15 LS Contribution 252.23 15.07 3.80 3.80 Total: -1.00 -29.09 252.23 -6.75 -35.83 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -3.55 Total: -0.58 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -0.64 Total: -14.46 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.42 Total: -40.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.27 Total: 17.29 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.09 -6.75 -35.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042227019.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.265 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds