Wall clock time and date at job start Sun Mar 29 2020 22:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47096 * 2 1 4 4 C 1.36934 * 120.00338 * 269.76347 * 3 2 1 5 5 H 1.08001 * 119.99319 * 322.05070 * 4 3 2 6 6 C 1.38812 * 120.00303 * 142.04606 * 4 3 2 7 7 N 1.31618 * 119.99529 * 157.05487 * 6 4 3 8 8 Si 1.86798 * 120.00073 * 337.05844 * 6 4 3 9 9 H 1.48507 * 109.46947 * 95.69796 * 8 6 4 10 10 H 1.48499 * 109.46996 * 215.69515 * 8 6 4 11 11 H 1.48497 * 109.47292 * 335.69842 * 8 6 4 12 12 C 1.46505 * 119.99763 * 89.75994 * 3 2 1 13 13 C 1.50701 * 109.47175 * 90.00534 * 12 3 2 14 14 C 1.33382 * 125.20360 * 89.99607 * 13 12 3 15 15 C 1.38434 * 114.91905 * 180.02562 * 14 13 12 16 16 C 1.33391 * 114.91799 * 0.25415 * 15 14 13 17 17 S 1.75887 * 109.59584 * 359.62773 * 16 15 14 18 18 H 1.09003 * 109.47626 * 299.99621 * 1 2 3 19 19 H 1.08994 * 109.47160 * 60.00038 * 1 2 3 20 20 H 1.09002 * 109.46950 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47783 * 239.99848 * 2 1 3 22 22 H 1.09008 * 109.47319 * 119.99438 * 2 1 3 23 23 H 0.97001 * 119.99286 * 180.02562 * 7 6 4 24 24 H 1.09000 * 109.47387 * 329.99791 * 12 3 2 25 25 H 1.09000 * 109.47064 * 210.00473 * 12 3 2 26 26 H 1.07996 * 122.54549 * 0.05849 * 14 13 12 27 27 H 1.08000 * 122.53609 * 179.97438 * 15 14 13 28 28 H 1.07996 * 125.19900 * 179.75439 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2511 2.0252 -1.1858 5 1 2.6738 1.4846 -2.0198 6 6 1.9439 3.3726 -1.3160 7 7 2.5473 4.0995 -2.2325 8 14 0.6743 4.1541 -0.1905 9 1 1.3609 4.8005 0.9567 10 1 -0.0952 5.1750 -0.9459 11 1 -0.2520 3.1081 0.3125 12 6 2.2574 2.0736 1.2688 13 6 3.6790 1.8375 1.7097 14 6 4.7211 2.6062 1.3898 15 6 5.9342 2.1909 1.9114 16 6 5.8780 1.0819 2.6506 17 16 4.2179 0.5057 2.7244 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8901 23 1 2.3328 5.0412 -2.3231 24 1 1.5736 1.6906 2.0263 25 1 2.0909 3.1426 1.1364 26 1 4.6256 3.4862 0.7711 27 1 6.8569 2.7218 1.7297 28 1 6.7224 0.6112 3.1320 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042227019.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:20 Heat of formation + Delta-G solvation = 37.376137 kcal Electronic energy + Delta-G solvation = -12120.190081 eV Core-core repulsion = 10070.010499 eV Total energy + Delta-G solvation = -2050.179582 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.05719 -37.53949 -34.01662 -32.39993 -30.22847 -27.31632 -25.59005 -24.00041 -21.97961 -20.05929 -19.17411 -17.61746 -17.19382 -16.31538 -16.14538 -15.21875 -14.96765 -14.28455 -13.98711 -13.80987 -13.45735 -13.20795 -13.09141 -12.91288 -12.66699 -12.32181 -11.96190 -11.75437 -11.60711 -11.46348 -10.66723 -9.48632 -9.25142 -8.85682 -8.22278 -5.59691 0.20094 0.84867 1.18754 1.27547 1.39353 1.50102 1.94768 2.39529 3.05079 3.41804 4.07051 4.26499 4.35701 4.37297 4.59177 4.76915 4.78766 4.80384 4.82054 5.03295 5.22201 5.33895 5.51679 5.56955 5.71433 5.92254 6.16495 6.93917 7.58339 8.01495 8.97216 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.013524 C = 0.010967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.052228 B = 2069.854955 C = 2552.433866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 N -0.604 5.604 4 C -0.252 4.252 5 H 0.038 0.962 6 C -0.011 4.011 7 N -0.942 5.942 8 Si 0.928 3.072 9 H -0.276 1.276 10 H -0.306 1.306 11 H -0.250 1.250 12 C 0.195 3.805 13 C -0.184 4.184 14 C -0.157 4.157 15 C -0.140 4.140 16 C -0.216 4.216 17 S 0.098 5.902 18 H 0.044 0.956 19 H 0.034 0.966 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.263 0.737 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.108 0.892 27 H 0.153 0.847 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.874 -6.871 11.791 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.015 3.985 3 N -0.326 5.326 4 C -0.382 4.382 5 H 0.056 0.944 6 C -0.208 4.208 7 N -0.586 5.586 8 Si 0.757 3.243 9 H -0.204 1.204 10 H -0.235 1.235 11 H -0.173 1.173 12 C 0.068 3.932 13 C -0.304 4.304 14 C -0.188 4.188 15 C -0.171 4.171 16 C -0.351 4.351 17 S 0.359 5.641 18 H 0.063 0.937 19 H 0.053 0.947 20 H 0.095 0.905 21 H 0.063 0.937 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.126 0.874 27 H 0.171 0.829 28 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 1.151 -7.981 12.392 14.785 hybrid contribution 0.293 2.152 -0.948 2.370 sum 1.444 -5.829 11.444 12.924 Atomic orbital electron populations 1.22211 0.97647 1.01402 1.00668 1.21047 0.93202 0.84289 0.99992 1.44275 1.75014 1.12654 1.00680 1.18561 1.35236 0.93323 0.91125 0.94439 1.25981 0.99226 0.97362 0.98221 1.70008 1.42510 1.07254 1.38811 0.86074 0.81540 0.78231 0.78493 1.20366 1.23483 1.17346 1.19840 0.88820 0.96717 0.87856 1.25697 1.01961 0.99553 1.03213 1.20215 0.93197 1.02422 1.02961 1.20295 0.98553 0.98219 0.99989 1.25834 1.00198 1.01277 1.07795 1.83655 1.02179 1.28942 1.49327 0.93694 0.94720 0.90512 0.93725 0.91974 0.92803 0.90700 0.93245 0.87387 0.82908 0.78948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 10.24 71.98 0.74 -4.75 15 2 C 0.14 5.37 6.39 86.38 0.55 5.92 15 3 N -0.60 -28.30 2.05 -706.32 -1.45 -29.75 15 4 C -0.25 -14.30 9.90 84.03 0.83 -13.46 15 5 H 0.04 2.39 8.06 -2.91 -0.02 2.36 15 6 C -0.01 -0.62 5.29 84.86 0.45 -0.18 15 7 N -0.94 -58.65 13.97 21.65 0.30 -58.35 15 8 Si 0.93 45.55 25.10 68.60 1.72 47.28 15 9 H -0.28 -13.07 6.68 99.48 0.66 -12.41 15 10 H -0.31 -15.26 7.11 99.48 0.71 -14.55 15 11 H -0.25 -11.53 7.11 99.48 0.71 -10.82 15 12 C 0.19 8.37 5.00 85.63 0.43 8.79 15 13 C -0.18 -7.33 6.09 24.59 0.15 -7.18 15 14 C -0.16 -6.39 10.05 21.22 0.21 -6.18 15 15 C -0.14 -4.53 10.18 21.22 0.22 -4.31 15 16 C -0.22 -5.97 11.23 66.72 0.75 -5.22 15 17 S 0.10 2.97 23.33 -56.49 -1.32 1.65 15 18 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 19 H 0.03 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 21 H 0.04 1.77 8.04 -2.39 -0.02 1.75 15 22 H 0.06 2.09 8.07 -2.38 -0.02 2.07 15 23 H 0.26 15.53 8.31 -92.71 -0.77 14.76 15 24 H 0.07 2.79 8.07 -2.39 -0.02 2.77 15 25 H 0.05 2.34 3.37 -2.39 -0.01 2.33 15 26 H 0.11 4.98 8.06 -2.91 -0.02 4.96 15 27 H 0.15 4.14 8.06 -2.91 -0.02 4.12 15 28 H 0.19 3.77 8.06 -2.91 -0.02 3.75 15 Total: -1.00 -64.47 252.23 4.67 -59.80 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.09 Total: 5.94 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 4.33 Total: -26.57 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -1.15 Total: -88.10 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.72 Total: 47.28 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.32 Total: 1.65 kcal Total: -64.47 4.67 -59.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042227019.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.174 kcal (2) G-P(sol) polarization free energy of solvation -64.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds