Wall clock time and date at job start Sun Mar 29 2020 22:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46961 * 2 1 4 4 C 1.50703 * 109.46824 * 239.99335 * 2 1 3 5 5 C 1.33381 * 125.19922 * 100.00499 * 4 2 1 6 6 C 1.38423 * 114.91907 * 180.28981 * 5 4 2 7 7 C 1.33384 * 114.92021 * 359.48658 * 6 5 4 8 8 S 1.75880 * 109.59478 * 0.48335 * 7 6 5 9 9 N 1.46504 * 109.47110 * 119.99739 * 2 1 3 10 10 C 1.46504 * 120.00014 * 59.99706 * 9 2 1 11 11 C 1.36933 * 119.99967 * 240.00577 * 9 2 1 12 12 H 1.08000 * 120.00086 * 21.75536 * 11 9 2 13 13 C 1.38819 * 119.99912 * 201.76753 * 11 9 2 14 14 N 1.31619 * 119.99905 * 11.43807 * 13 11 9 15 15 Si 1.86792 * 119.99973 * 191.44310 * 13 11 9 16 16 H 1.48499 * 109.47327 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47252 * 119.99547 * 15 13 11 18 18 H 1.48505 * 109.47215 * 239.99787 * 15 13 11 19 19 H 1.08994 * 109.46841 * 60.00406 * 1 2 3 20 20 H 1.08998 * 109.47194 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47171 * 300.00410 * 1 2 3 22 22 H 1.08007 * 122.54384 * 0.02562 * 5 4 2 23 23 H 1.08000 * 122.53815 * 179.73068 * 6 5 4 24 24 H 1.08005 * 125.20444 * 180.21062 * 7 6 5 25 25 H 1.09001 * 109.47110 * 95.25062 * 10 9 2 26 26 H 1.08999 * 109.47043 * 215.24984 * 10 9 2 27 27 H 1.08999 * 109.47003 * 335.24997 * 10 9 2 28 28 H 0.97002 * 119.99864 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 6 2.4671 -0.1120 -2.3403 6 6 2.8747 -0.9721 -3.3454 7 6 2.7809 -2.2689 -3.0477 8 16 2.1344 -2.4559 -1.4227 9 7 2.0184 -0.6906 1.1962 10 6 1.6644 -2.0932 1.4282 11 6 2.8055 -0.0250 2.0976 12 1 2.7868 1.0541 2.1375 13 6 3.6278 -0.7373 2.9600 14 7 3.8250 -2.0244 2.7681 15 14 4.4541 0.1308 4.3926 16 1 4.0737 1.5662 4.3877 17 1 4.0178 -0.4929 5.6677 18 1 5.9283 0.0095 4.2613 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 2.4949 0.9623 -2.4483 23 1 3.2444 -0.6198 -4.2970 24 1 3.0555 -3.0802 -3.7056 25 1 2.4615 -2.7357 1.0541 26 1 1.5325 -2.2626 2.4968 27 1 0.7359 -2.3246 0.9062 28 1 4.3992 -2.5223 3.3709 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042227146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:04 Heat of formation + Delta-G solvation = 55.482462 kcal Electronic energy + Delta-G solvation = -12123.710162 eV Core-core repulsion = 10074.315729 eV Total energy + Delta-G solvation = -2049.394433 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.52767 -35.79725 -32.33409 -29.48131 -27.71789 -26.10035 -23.98827 -22.68881 -20.09710 -18.56166 -16.76923 -16.23637 -14.91188 -14.78464 -13.77258 -13.46779 -12.94733 -12.53061 -12.15384 -11.95664 -11.79740 -11.42812 -11.12458 -10.84110 -10.78204 -10.54980 -10.34719 -9.93730 -9.87045 -9.72259 -8.57919 -7.93461 -7.70345 -6.83297 -5.73922 -3.20077 1.72722 2.42035 2.82397 3.36183 3.40038 3.44509 3.46477 4.47696 5.36521 5.46350 5.56382 5.59270 5.97953 6.07963 6.13458 6.17870 6.38041 6.61481 6.66210 6.78290 6.86170 7.01270 7.16318 7.37067 7.72235 7.79817 8.35834 9.19889 9.81691 10.30327 11.29980 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.041528 B = 0.010342 C = 0.009920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.083453 B = 2706.755249 C = 2821.971240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.229 3.771 3 H 0.080 0.920 4 C -0.146 4.146 5 C -0.177 4.177 6 C -0.132 4.132 7 C -0.265 4.265 8 S 0.135 5.865 9 N -0.589 5.589 10 C 0.151 3.849 11 C -0.257 4.257 12 H 0.071 0.929 13 C 0.003 3.997 14 N -0.904 5.904 15 Si 0.907 3.093 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.290 1.290 19 H 0.047 0.953 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.129 0.871 23 H 0.124 0.876 24 H 0.149 0.851 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.002 0.998 28 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 0.801 -8.113 9.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.118 3.882 3 H 0.098 0.902 4 C -0.267 4.267 5 C -0.207 4.207 6 C -0.164 4.164 7 C -0.400 4.400 8 S 0.399 5.601 9 N -0.310 5.310 10 C 0.006 3.994 11 C -0.386 4.386 12 H 0.089 0.911 13 C -0.195 4.195 14 N -0.548 5.548 15 Si 0.737 3.263 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.217 1.217 19 H 0.066 0.934 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.146 0.854 23 H 0.142 0.858 24 H 0.167 0.833 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.020 0.980 28 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.655 -0.579 -7.077 8.490 hybrid contribution 1.133 1.500 -0.264 1.898 sum -3.522 0.921 -7.340 8.194 Atomic orbital electron populations 1.22275 0.97216 1.01470 1.00661 1.19091 0.92140 0.94942 0.82017 0.90201 1.26048 1.04546 0.96081 0.99984 1.19932 1.06548 1.00456 0.93765 1.19969 1.03688 0.92572 1.00132 1.25768 1.12261 1.00195 1.01816 1.84617 1.61991 1.05814 1.07666 1.44126 1.57652 1.09902 1.19352 1.20924 0.94578 0.84589 0.99285 1.19305 1.17166 0.91133 1.11002 0.91076 1.25054 0.97777 0.96139 1.00555 1.70087 1.39917 1.06949 1.37856 0.86146 0.78999 0.78895 0.82267 1.20284 1.21582 1.21707 0.93397 0.93035 0.92270 0.85365 0.85843 0.83333 0.93812 0.93111 0.97968 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.16 37.16 0.34 -2.45 15 2 C 0.23 4.81 3.15 -69.08 -0.22 4.59 15 3 H 0.08 1.67 7.84 -51.93 -0.41 1.26 15 4 C -0.15 -2.93 5.45 -36.00 -0.20 -3.13 15 5 C -0.18 -3.20 10.04 -41.21 -0.41 -3.62 15 6 C -0.13 -2.20 10.18 -41.21 -0.42 -2.62 15 7 C -0.26 -4.47 11.23 29.04 0.33 -4.14 15 8 S 0.14 2.61 19.61 -107.50 -2.11 0.50 15 9 N -0.59 -14.78 2.81 -174.80 -0.49 -15.27 15 10 C 0.15 3.73 6.89 59.85 0.41 4.14 15 11 C -0.26 -7.03 9.61 -15.06 -0.14 -7.18 15 12 H 0.07 1.90 7.80 -52.49 -0.41 1.49 15 13 C 0.00 0.10 5.14 -17.43 -0.09 0.01 15 14 N -0.90 -26.25 10.55 55.49 0.59 -25.67 15 15 Si 0.91 21.83 29.57 -169.99 -5.03 16.81 15 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 19 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 20 H 0.05 0.92 6.66 -51.93 -0.35 0.58 15 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.13 2.06 8.06 -52.48 -0.42 1.64 15 23 H 0.12 1.70 8.06 -52.49 -0.42 1.28 15 24 H 0.15 2.09 8.06 -52.48 -0.42 1.67 15 25 H 0.04 1.16 6.10 -51.93 -0.32 0.84 15 26 H 0.05 1.35 7.22 -51.93 -0.37 0.97 15 27 H 0.00 0.04 5.97 -51.93 -0.31 -0.27 15 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 15 LS Contribution 245.08 15.07 3.69 3.69 Total: -1.00 -29.36 245.08 -7.16 -36.52 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -3.41 Total: -2.18 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.40 Total: -14.40 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.09 Total: -40.94 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.81 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.11 Total: 0.50 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.36 -7.16 -36.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042227146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.000 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds