Wall clock time and date at job start Sun Mar 29 2020 21:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 120.00370 * 2 1 4 4 H 1.48502 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46765 * 300.00137 * 3 2 1 6 6 H 1.48497 * 109.46845 * 59.99723 * 3 2 1 7 7 C 1.38815 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00479 * 197.03190 * 7 2 1 9 9 N 1.36946 * 119.99409 * 17.02288 * 7 2 1 10 10 C 1.47080 * 120.88116 * 206.58857 * 9 7 2 11 11 C 1.53238 * 108.51683 * 231.16586 * 10 9 7 12 12 N 1.46894 * 109.34080 * 306.16604 * 11 10 9 13 13 C 1.46902 * 111.00363 * 187.25932 * 12 11 10 14 14 C 1.52993 * 109.47463 * 170.00153 * 13 12 11 15 15 C 1.52998 * 117.49887 * 175.00166 * 14 13 12 16 16 C 1.52995 * 60.00261 * 107.48590 * 15 14 13 17 17 C 1.46899 * 111.26859 * 63.10517 * 12 11 10 18 18 C 1.47075 * 120.87999 * 26.56278 * 9 7 2 19 19 H 0.97004 * 119.99691 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.63029 * 111.45054 * 10 9 7 21 21 H 1.09004 * 109.62615 * 350.87045 * 10 9 7 22 22 H 1.09005 * 109.49055 * 186.20403 * 11 10 9 23 23 H 1.08998 * 109.51952 * 66.14488 * 11 10 9 24 24 H 1.09004 * 109.47126 * 49.99376 * 13 12 11 25 25 H 1.09005 * 109.47006 * 290.00403 * 13 12 11 26 26 H 1.09003 * 115.56349 * 29.30745 * 14 13 12 27 27 H 1.09001 * 117.49871 * 359.97438 * 15 14 13 28 28 H 1.09007 * 117.49816 * 214.97765 * 15 14 13 29 29 H 1.09000 * 117.50096 * 107.48926 * 16 15 14 30 30 H 1.08998 * 117.50062 * 252.48673 * 16 15 14 31 31 H 1.09005 * 109.48990 * 56.86044 * 17 12 11 32 32 H 1.09001 * 109.48941 * 176.93600 * 17 12 11 33 33 H 1.09003 * 109.63100 * 248.54688 * 18 9 7 34 34 H 1.08998 * 109.63363 * 9.13063 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0547 -1.2228 0.2734 9 7 1.3705 -2.3619 -0.3483 10 6 1.8307 -3.6611 0.1652 11 6 2.0022 -4.6191 -1.0185 12 7 0.7547 -4.6639 -1.7928 13 6 0.8183 -5.6980 -2.8342 14 6 -0.5692 -5.8872 -3.4505 15 6 -0.6897 -6.8421 -4.6398 16 6 -1.2415 -7.2500 -3.2724 17 6 0.4401 -3.3514 -2.3727 18 6 0.2046 -2.3414 -1.2446 19 1 -0.4850 0.8401 -0.0004 20 1 1.0918 -4.0636 0.8580 21 1 2.7855 -3.5355 0.6759 22 1 2.2363 -5.6171 -0.6477 23 1 2.8137 -4.2685 -1.6561 24 1 1.1513 -6.6377 -2.3933 25 1 1.5211 -5.3910 -3.6088 26 1 -1.2100 -5.0054 -3.4461 27 1 0.2196 -7.3353 -4.9835 28 1 -1.4098 -6.5886 -5.4179 29 1 -2.3246 -7.2648 -3.1507 30 1 -0.6955 -8.0120 -2.7163 31 1 1.2733 -3.0180 -2.9915 32 1 -0.4588 -3.4300 -2.9841 33 1 -0.6907 -2.6170 -0.6873 34 1 0.0842 -1.3434 -1.6660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042338195.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:48 Heat of formation + Delta-G solvation = 36.356753 kcal Electronic energy + Delta-G solvation = -14259.076233 eV Core-core repulsion = 11999.651333 eV Total energy + Delta-G solvation = -2259.424900 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.93340 -37.99219 -35.75177 -33.16582 -31.65492 -29.26643 -26.49172 -24.47022 -24.09643 -23.15716 -21.16520 -20.77264 -18.74278 -17.25611 -16.62103 -15.96091 -15.92071 -15.44594 -15.28498 -14.84482 -14.63981 -14.35706 -13.42509 -13.16368 -12.96695 -12.65555 -12.51876 -12.32305 -12.21504 -12.05049 -11.90514 -11.56569 -11.42013 -11.11221 -10.78839 -10.60542 -9.23390 -8.69524 -7.88687 -5.33774 1.45650 1.46845 1.58131 2.49990 2.81762 3.16491 3.27069 3.66937 3.83606 4.05745 4.17928 4.32835 4.34883 4.44418 4.54291 4.57722 4.67475 4.77138 4.81429 4.84343 4.90068 5.04341 5.08166 5.19126 5.31793 5.34153 5.38782 5.59958 5.66069 6.19499 6.31503 6.36710 7.11837 7.82401 8.37186 9.18508 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.058952 B = 0.007242 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.850659 B = 3865.443808 C = 4070.954651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.265 4.265 8 H 0.068 0.932 9 N -0.616 5.616 10 C 0.143 3.857 11 C 0.054 3.946 12 N -0.542 5.542 13 C 0.090 3.910 14 C -0.167 4.167 15 C -0.168 4.168 16 C -0.171 4.171 17 C 0.052 3.948 18 C 0.186 3.814 19 H 0.251 0.749 20 H 0.016 0.984 21 H 0.062 0.938 22 H 0.095 0.905 23 H 0.023 0.977 24 H 0.085 0.915 25 H 0.030 0.970 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.016 0.984 32 H 0.079 0.921 33 H -0.003 1.003 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 -12.425 -7.571 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.395 4.395 8 H 0.086 0.914 9 N -0.340 5.340 10 C 0.018 3.982 11 C -0.075 4.075 12 N -0.267 5.267 13 C -0.037 4.037 14 C -0.185 4.185 15 C -0.205 4.205 16 C -0.208 4.208 17 C -0.077 4.077 18 C 0.060 3.940 19 H 0.060 0.940 20 H 0.034 0.966 21 H 0.080 0.920 22 H 0.113 0.887 23 H 0.041 0.959 24 H 0.103 0.897 25 H 0.048 0.952 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.015 0.985 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.554 -12.421 -7.229 14.382 hybrid contribution 0.699 1.418 -0.280 1.606 sum 1.252 -11.003 -7.509 13.380 Atomic orbital electron populations 1.70205 1.06743 1.25847 1.55522 1.25832 0.96108 1.01609 1.01265 0.85164 0.78547 0.79599 0.76867 1.19059 1.21557 1.21751 1.19594 0.92942 0.86003 1.40945 0.91383 1.44439 1.34250 1.02256 1.53068 1.21141 0.97472 0.85531 0.94088 1.22471 0.89524 0.99995 0.95481 1.61864 1.34232 1.05411 1.25146 1.21680 0.94818 0.95105 0.92121 1.22243 0.97976 0.94942 1.03378 1.23035 1.03574 1.02538 0.91386 1.23041 1.00719 0.97110 0.99886 1.22585 0.99255 0.89380 0.96516 1.20608 0.87800 0.96316 0.89245 0.94032 0.96635 0.91976 0.88687 0.95917 0.89686 0.95189 0.89015 0.87909 0.88043 0.88650 0.88166 0.96603 0.90249 0.98528 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.97 11.15 21.65 0.24 -56.73 16 2 C -0.05 -3.04 4.94 84.86 0.42 -2.62 16 3 Si 0.97 45.67 29.59 68.60 2.03 47.70 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.26 -15.09 9.63 84.03 0.81 -14.28 16 8 H 0.07 3.76 7.88 -2.91 -0.02 3.73 16 9 N -0.62 -32.72 3.04 -698.14 -2.12 -34.84 16 10 C 0.14 6.27 6.69 86.35 0.58 6.85 16 11 C 0.05 1.94 5.62 86.38 0.49 2.43 16 12 N -0.54 -19.48 4.63 -895.26 -4.14 -23.62 16 13 C 0.09 2.51 5.24 86.30 0.45 2.96 16 14 C -0.17 -4.22 5.66 -10.80 -0.06 -4.28 16 15 C -0.17 -3.21 10.25 30.59 0.31 -2.90 16 16 C -0.17 -3.51 10.18 30.59 0.31 -3.20 16 17 C 0.05 2.12 5.47 86.38 0.47 2.59 16 18 C 0.19 9.58 5.42 86.35 0.47 10.05 16 19 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 20 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 21 H 0.06 2.57 7.95 -2.39 -0.02 2.55 16 22 H 0.09 2.75 7.99 -2.38 -0.02 2.73 16 23 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.08 2.06 7.70 -2.38 -0.02 2.05 16 25 H 0.03 0.83 8.12 -2.38 -0.02 0.82 16 26 H 0.09 2.65 6.33 -2.39 -0.02 2.63 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.10 1.89 8.03 -2.39 -0.02 1.87 16 31 H 0.02 0.66 8.14 -2.38 -0.02 0.65 16 32 H 0.08 2.93 6.12 -2.39 -0.01 2.92 16 33 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.06 3.22 6.12 -2.39 -0.01 3.20 16 Total: -1.00 -64.48 270.37 1.31 -63.17 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.05 Total: 6.72 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 4.25 Total: -2.41 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -6.02 Total: -115.18 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -64.48 1.31 -63.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042338195.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.529 kcal (2) G-P(sol) polarization free energy of solvation -64.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds