Wall clock time and date at job start Sun Mar 29 2020 21:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.62502 * 328.10790 * 11 10 9 13 13 C 1.55137 * 110.70294 * 91.40319 * 11 10 9 14 14 C 1.54908 * 101.65517 * 154.03658 * 13 11 10 15 15 N 1.47846 * 104.79085 * 322.92901 * 14 13 11 16 16 C 1.46904 * 110.99823 * 146.36105 * 15 14 13 17 17 C 1.53001 * 117.49520 * 122.77660 * 16 15 14 18 18 C 1.53006 * 117.49585 * 54.15497 * 16 15 14 19 19 C 1.47444 * 108.57010 * 24.09429 * 15 14 13 20 20 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.00902 * 111.00582 * 303.95889 * 10 9 7 24 24 H 1.09004 * 110.99402 * 272.13168 * 13 11 10 25 25 H 1.09003 * 110.98956 * 35.94175 * 13 11 10 26 26 H 1.08994 * 110.37558 * 204.10416 * 14 13 11 27 27 H 1.08997 * 110.37014 * 81.75662 * 14 13 11 28 28 H 1.08994 * 115.55406 * 268.48958 * 16 15 14 29 29 H 1.08999 * 117.50296 * 0.02562 * 17 16 15 30 30 H 1.09005 * 117.49428 * 145.02308 * 17 16 15 31 31 H 1.08994 * 117.49672 * 214.97758 * 18 16 15 32 32 H 1.09004 * 117.49789 * 0.02562 * 18 16 15 33 33 H 1.09001 * 109.88910 * 239.60014 * 19 15 14 34 34 H 1.09005 * 110.02106 * 118.49185 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4697 -2.6183 0.0009 12 1 5.8766 -1.7627 -0.5380 13 6 6.0170 -2.6686 1.4517 14 6 7.3855 -3.3647 1.2459 15 7 7.1424 -4.3704 0.1898 16 6 8.3299 -4.5410 -0.6580 17 6 8.9219 -5.9474 -0.7697 18 6 9.6523 -4.8718 0.0369 19 6 5.9801 -3.9406 -0.6092 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 3.6253 -3.0956 0.7820 24 1 6.1466 -1.6643 1.8552 25 1 5.3682 -3.2647 2.0933 26 1 7.7059 -3.8516 2.1669 27 1 8.1329 -2.6426 0.9174 28 1 8.3714 -3.9055 -1.5425 29 1 8.4300 -6.7461 -0.2144 30 1 9.3528 -6.2374 -1.7280 31 1 10.5637 -4.4541 -0.3908 32 1 9.6411 -4.9631 1.1230 33 1 5.1972 -4.6975 -0.5618 34 1 6.2783 -3.7802 -1.6453 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044722731.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:08 Heat of formation + Delta-G solvation = 33.447272 kcal Electronic energy + Delta-G solvation = -13791.147588 eV Core-core repulsion = 11531.596524 eV Total energy + Delta-G solvation = -2259.551065 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.29606 -36.54977 -34.11027 -32.19455 -29.47318 -28.56967 -25.73763 -22.66142 -22.07972 -21.29346 -20.48921 -20.03955 -16.85752 -16.44886 -15.90210 -14.88345 -14.53793 -13.86219 -13.59489 -13.24374 -13.01298 -12.66481 -12.19062 -12.13464 -11.73474 -11.66580 -11.39432 -11.22488 -10.67504 -10.63627 -10.43754 -10.38144 -10.17424 -9.81870 -9.31287 -8.60738 -8.23703 -7.46535 -6.07280 -4.05368 3.27044 3.34243 3.35969 3.66956 3.89457 4.40199 4.72886 4.83001 4.84653 4.98007 5.06890 5.20229 5.25627 5.44515 5.50190 5.55406 5.57128 5.74484 5.78476 5.88354 6.01514 6.07469 6.17805 6.29737 6.41903 6.75167 6.96960 7.02575 7.19772 7.58328 7.88278 8.31131 8.63164 9.01006 9.54514 11.06056 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.067916 B = 0.005906 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.174155 B = 4739.935191 C = 4883.961810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.165 3.835 10 N -0.669 5.669 11 C 0.067 3.933 12 H 0.074 0.926 13 C -0.161 4.161 14 C 0.049 3.951 15 N -0.504 5.504 16 C 0.003 3.997 17 C -0.164 4.164 18 C -0.180 4.180 19 C 0.055 3.945 20 H 0.264 0.736 21 H -0.016 1.016 22 H 0.020 0.980 23 H 0.340 0.660 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.801 -6.912 0.861 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.299 5.299 11 C -0.045 4.045 12 H 0.093 0.907 13 C -0.201 4.201 14 C -0.079 4.079 15 N -0.228 5.228 16 C -0.106 4.106 17 C -0.202 4.202 18 C -0.218 4.218 19 C -0.073 4.073 20 H 0.074 0.926 21 H 0.002 0.998 22 H 0.038 0.962 23 H 0.158 0.842 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.454 -7.327 0.392 18.933 hybrid contribution 0.765 2.042 0.493 2.235 sum 18.219 -5.285 0.885 18.990 Atomic orbital electron populations 1.69899 1.06155 1.26884 1.50926 1.24902 0.94741 0.98918 0.94718 0.86826 0.80224 0.83899 0.78569 1.20161 1.21170 1.19338 1.21065 0.88935 0.94855 1.50654 0.90241 1.20017 0.96651 0.84968 0.94639 1.60424 1.03180 1.16704 1.49594 1.22805 0.90923 0.97082 0.93720 0.90731 1.23465 0.96794 1.00593 0.99205 1.22892 0.96998 0.92791 0.95172 1.63443 1.02883 1.44799 1.11655 1.22700 0.90354 0.99459 0.98134 1.23039 1.02928 0.92798 1.01434 1.23037 0.94851 1.04106 0.99786 1.22867 0.92279 0.96873 0.95313 0.92627 0.99784 0.96178 0.84179 0.91107 0.90425 0.90794 0.93628 0.89214 0.88227 0.89007 0.88986 0.88546 0.89430 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -14.86 9.87 -34.44 -0.34 -15.20 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 9 C 0.17 4.01 4.37 -4.98 -0.02 3.99 16 10 N -0.67 -13.83 6.30 -106.07 -0.67 -14.50 16 11 C 0.07 1.13 3.27 -65.89 -0.22 0.92 16 12 H 0.07 1.30 7.82 -51.93 -0.41 0.89 16 13 C -0.16 -2.37 6.66 -24.59 -0.16 -2.53 16 14 C 0.05 0.63 6.01 -2.30 -0.01 0.61 16 15 N -0.50 -6.80 5.34 -223.29 -1.19 -7.99 16 16 C 0.00 0.03 5.08 -67.71 -0.34 -0.31 16 17 C -0.16 -1.64 10.46 -26.73 -0.28 -1.92 16 18 C -0.18 -1.74 9.82 -26.72 -0.26 -2.00 16 19 C 0.05 0.82 6.64 -2.84 -0.02 0.81 16 20 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 21 H -0.02 -0.38 7.20 -51.93 -0.37 -0.75 16 22 H 0.02 0.50 7.51 -51.93 -0.39 0.11 16 23 H 0.34 6.86 8.20 -39.29 -0.32 6.54 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.08 1.16 7.77 -51.93 -0.40 0.76 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.56 7.79 -51.93 -0.40 0.15 16 28 H 0.09 1.04 7.67 -51.93 -0.40 0.64 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.94 7.95 -51.93 -0.41 0.53 16 33 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 34 H 0.05 0.80 7.31 -51.93 -0.38 0.42 16 LS Contribution 275.79 15.07 4.16 4.16 Total: -1.00 -29.99 275.79 -8.97 -38.96 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.61 Total: 3.11 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.76 Total: -13.71 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -1.09 Total: -49.49 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.99 -8.97 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044722731.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.404 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds