Wall clock time and date at job start Sun Mar 29 2020 21:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.62502 * 328.10790 * 11 10 9 13 13 C 1.55137 * 110.70294 * 91.40319 * 11 10 9 14 14 C 1.54908 * 101.65517 * 154.03658 * 13 11 10 15 15 N 1.47846 * 104.79085 * 322.92901 * 14 13 11 16 16 C 1.46904 * 110.99823 * 146.36105 * 15 14 13 17 17 C 1.53001 * 117.49520 * 122.77660 * 16 15 14 18 18 C 1.53006 * 117.49585 * 54.15497 * 16 15 14 19 19 C 1.47444 * 108.57010 * 24.09429 * 15 14 13 20 20 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.00902 * 111.00582 * 303.95889 * 10 9 7 24 24 H 1.09004 * 110.99402 * 272.13168 * 13 11 10 25 25 H 1.09003 * 110.98956 * 35.94175 * 13 11 10 26 26 H 1.08994 * 110.37558 * 204.10416 * 14 13 11 27 27 H 1.08997 * 110.37014 * 81.75662 * 14 13 11 28 28 H 1.08994 * 115.55406 * 268.48958 * 16 15 14 29 29 H 1.08999 * 117.50296 * 0.02562 * 17 16 15 30 30 H 1.09005 * 117.49428 * 145.02308 * 17 16 15 31 31 H 1.08994 * 117.49672 * 214.97758 * 18 16 15 32 32 H 1.09004 * 117.49789 * 0.02562 * 18 16 15 33 33 H 1.09001 * 109.88910 * 239.60014 * 19 15 14 34 34 H 1.09005 * 110.02106 * 118.49185 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4697 -2.6183 0.0009 12 1 5.8766 -1.7627 -0.5380 13 6 6.0170 -2.6686 1.4517 14 6 7.3855 -3.3647 1.2459 15 7 7.1424 -4.3704 0.1898 16 6 8.3299 -4.5410 -0.6580 17 6 8.9219 -5.9474 -0.7697 18 6 9.6523 -4.8718 0.0369 19 6 5.9801 -3.9406 -0.6092 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 3.6253 -3.0956 0.7820 24 1 6.1466 -1.6643 1.8552 25 1 5.3682 -3.2647 2.0933 26 1 7.7059 -3.8516 2.1669 27 1 8.1329 -2.6426 0.9174 28 1 8.3714 -3.9055 -1.5425 29 1 8.4300 -6.7461 -0.2144 30 1 9.3528 -6.2374 -1.7280 31 1 10.5637 -4.4541 -0.3908 32 1 9.6411 -4.9631 1.1230 33 1 5.1972 -4.6975 -0.5618 34 1 6.2783 -3.7802 -1.6453 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044722731.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:08 Heat of formation + Delta-G solvation = 11.566634 kcal Electronic energy + Delta-G solvation = -13792.096404 eV Core-core repulsion = 11531.596524 eV Total energy + Delta-G solvation = -2260.499880 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.39945 -37.70429 -35.69855 -34.18024 -30.74674 -30.07872 -27.44819 -23.54860 -23.31243 -22.96681 -21.73806 -21.09532 -18.94990 -17.49677 -17.14280 -16.52955 -15.81267 -15.58817 -14.83014 -14.73889 -14.38638 -14.13661 -13.66639 -13.62498 -13.04791 -12.92368 -12.61077 -12.40740 -12.29913 -12.19184 -11.84236 -11.73161 -11.50548 -11.27413 -11.00361 -10.82724 -9.29529 -9.09125 -8.31632 -6.36535 1.33658 1.35096 1.45974 2.32391 2.81288 2.92911 3.02319 3.41292 3.75230 3.80970 4.02796 4.09954 4.15929 4.30442 4.41732 4.46941 4.58959 4.76252 4.80642 4.81960 4.90074 4.98459 5.05364 5.09435 5.14589 5.16103 5.33583 5.49917 5.91322 5.96430 6.19868 6.53556 6.63339 6.74347 7.28569 8.85237 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.067916 B = 0.005906 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.174155 B = 4739.935191 C = 4883.961810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.250 1.250 7 C -0.531 4.531 8 H 0.037 0.963 9 C 0.178 3.822 10 N -0.679 5.679 11 C 0.064 3.936 12 H 0.072 0.928 13 C -0.156 4.156 14 C 0.056 3.944 15 N -0.509 5.509 16 C -0.020 4.020 17 C -0.161 4.161 18 C -0.164 4.164 19 C 0.064 3.936 20 H 0.268 0.732 21 H -0.011 1.011 22 H 0.021 0.979 23 H 0.339 0.661 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.574 -6.289 1.017 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.174 1.174 7 C -0.569 4.569 8 H 0.055 0.945 9 C 0.050 3.950 10 N -0.309 5.309 11 C -0.048 4.048 12 H 0.090 0.910 13 C -0.196 4.196 14 C -0.071 4.071 15 N -0.233 5.233 16 C -0.129 4.129 17 C -0.199 4.199 18 C -0.202 4.202 19 C -0.064 4.064 20 H 0.077 0.923 21 H 0.006 0.994 22 H 0.039 0.961 23 H 0.158 0.842 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.256 -6.731 0.549 21.352 hybrid contribution -0.126 1.727 0.436 1.785 sum 20.130 -5.004 0.985 20.766 Atomic orbital electron populations 1.70054 1.08202 1.28277 1.52207 1.25883 0.95636 1.03314 0.94057 0.85648 0.79295 0.78328 0.79230 1.19104 1.20514 1.17422 1.21347 0.91427 0.93478 1.50623 0.94491 1.19740 0.93626 0.87071 0.94600 1.60320 1.05943 1.14662 1.49950 1.22870 0.88345 0.98019 0.95568 0.90983 1.23389 0.97824 1.01004 0.97394 1.22888 0.95830 0.92800 0.95609 1.63436 1.03256 1.44779 1.11870 1.22794 0.90639 1.00888 0.98609 1.23098 1.02528 0.91938 1.02287 1.23110 0.94318 1.02946 0.99818 1.22678 0.92749 0.95340 0.95682 0.92295 0.99352 0.96068 0.84220 0.90865 0.90915 0.89397 0.92632 0.89150 0.88959 0.87457 0.87185 0.88499 0.90896 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 2 C 0.01 0.51 5.47 84.65 0.46 0.98 16 3 Si 0.95 44.18 27.47 68.60 1.88 46.06 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 7 C -0.53 -31.17 9.87 25.60 0.25 -30.92 16 8 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 9 C 0.18 8.59 4.37 85.56 0.37 8.96 16 10 N -0.68 -28.10 6.30 -489.49 -3.08 -31.18 16 11 C 0.06 2.08 3.27 46.09 0.15 2.23 16 12 H 0.07 2.40 7.82 -2.39 -0.02 2.38 16 13 C -0.16 -4.35 6.66 31.98 0.21 -4.14 16 14 C 0.06 1.30 6.01 86.77 0.52 1.82 16 15 N -0.51 -12.82 5.34 -860.35 -4.59 -17.41 16 16 C -0.02 -0.42 5.08 44.92 0.23 -0.20 16 17 C -0.16 -2.82 10.46 30.60 0.32 -2.50 16 18 C -0.16 -2.65 9.82 30.60 0.30 -2.35 16 19 C 0.06 1.87 6.64 86.65 0.58 2.44 16 20 H 0.27 15.67 8.31 -92.71 -0.77 14.89 16 21 H -0.01 -0.53 7.20 -2.39 -0.02 -0.54 16 22 H 0.02 1.02 7.51 -2.39 -0.02 1.01 16 23 H 0.34 13.95 8.20 -89.69 -0.74 13.21 16 24 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.07 2.09 7.77 -2.39 -0.02 2.08 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.19 7.79 -2.39 -0.02 1.17 16 28 H 0.09 1.89 7.67 -2.39 -0.02 1.87 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.58 7.95 -2.39 -0.02 1.56 16 33 H 0.07 2.34 8.03 -2.39 -0.02 2.32 16 34 H 0.06 1.64 7.31 -2.38 -0.02 1.62 16 Total: -1.00 -64.64 275.79 -1.82 -66.46 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.27 Total: 19.11 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 3.40 Total: -23.67 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -7.38 Total: -107.96 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -64.64 -1.82 -66.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044722731.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.027 kcal (2) G-P(sol) polarization free energy of solvation -64.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds