Wall clock time and date at job start Sun Mar 29 2020 21:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35449 * 126.77485 * 2 1 4 4 C 1.41383 * 103.98299 * 180.10002 * 3 2 1 5 5 C 1.50701 * 126.79957 * 179.88628 * 4 3 2 6 6 N 1.46901 * 109.46921 * 94.70567 * 5 4 3 7 7 C 1.46906 * 110.99793 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47279 * 325.00167 * 7 6 5 9 9 C 1.52995 * 109.46946 * 85.00144 * 7 6 5 10 10 C 1.50701 * 109.46893 * 205.00308 * 7 6 5 11 11 H 1.07996 * 120.00253 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99674 * 180.02562 * 10 7 6 13 13 N 1.31513 * 120.00353 * 359.97438 * 12 10 7 14 14 Si 1.86796 * 119.99967 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47200 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47268 * 119.99842 * 14 12 10 17 17 H 1.48506 * 109.47301 * 239.99804 * 14 12 10 18 18 N 1.30174 * 106.39727 * 359.61974 * 4 3 2 19 19 O 1.20918 * 111.60331 * 0.24566 * 18 4 3 20 20 H 1.09003 * 109.46971 * 180.30719 * 1 2 3 21 21 H 1.09007 * 109.47399 * 300.29896 * 1 2 3 22 22 H 1.08993 * 109.47266 * 60.30286 * 1 2 3 23 23 H 1.07999 * 128.01233 * 359.95491 * 3 2 1 24 24 H 1.09002 * 109.47060 * 214.70748 * 5 4 3 25 25 H 1.09001 * 109.47380 * 334.70836 * 5 4 3 26 26 H 1.00898 * 110.99877 * 56.04636 * 6 5 4 27 27 H 1.09003 * 109.47112 * 59.99921 * 9 7 6 28 28 H 1.09001 * 109.47056 * 179.97438 * 9 7 6 29 29 H 1.09000 * 109.47395 * 299.99746 * 9 7 6 30 30 H 0.97002 * 120.00598 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0024 5 6 4.9210 1.3000 -0.0058 6 7 5.4038 1.4510 1.3734 7 6 6.6723 2.1910 1.4091 8 1 7.2658 1.9374 0.5306 9 6 6.3860 3.6939 1.4145 10 6 7.4352 1.8204 2.6548 11 1 7.0195 1.1063 3.3501 12 6 8.6638 2.3931 2.9067 13 7 9.1703 3.2624 2.0596 14 14 9.6092 1.9343 4.4511 15 1 8.8278 0.9431 5.2336 16 1 10.9191 1.3456 4.0731 17 1 9.8319 3.1499 5.2746 18 7 3.4764 -0.7564 0.0047 19 8 2.3095 -1.0736 0.0062 20 1 -0.3633 -1.0277 0.0055 21 1 -0.3634 0.5185 0.8873 22 1 -0.3633 0.5091 -0.8926 23 1 2.0345 2.1271 -0.0007 24 1 5.6607 0.7549 -0.5921 25 1 4.7632 2.2850 -0.4453 26 1 5.4965 0.5531 1.8243 27 1 5.7925 3.9475 2.2929 28 1 7.3272 4.2430 1.4414 29 1 5.8342 3.9620 0.5135 30 1 10.0345 3.6656 2.2370 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044724820.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:23 Heat of formation + Delta-G solvation = 53.260674 kcal Electronic energy + Delta-G solvation = -13441.837125 eV Core-core repulsion = 11047.312140 eV Total energy + Delta-G solvation = -2394.524986 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.66407 -36.29937 -34.05499 -33.26932 -31.99838 -28.77244 -27.72057 -25.58355 -24.66415 -22.73875 -19.95979 -19.61104 -17.38053 -17.12028 -16.40823 -14.94423 -14.45555 -14.25123 -13.67797 -13.59292 -13.32350 -13.03431 -12.46084 -12.15966 -11.95933 -11.23380 -10.96064 -10.87962 -10.78645 -10.29317 -10.22291 -10.13064 -9.70244 -9.13271 -8.84430 -8.49442 -7.35997 -6.04263 -4.10592 1.66994 2.51405 3.28864 3.30208 3.36511 3.41592 4.39210 4.51644 4.62909 5.14322 5.26972 5.27634 5.33615 5.45591 5.50265 5.75414 5.80199 6.08012 6.21007 6.35447 6.83779 7.10067 7.17677 7.44444 7.76454 7.85287 8.23124 8.32097 8.55279 8.60169 8.98617 9.55374 11.02242 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.059619 B = 0.006133 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.534001 B = 4564.238139 C = 4765.701089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.050 4.050 3 C -0.217 4.217 4 C 0.038 3.962 5 C 0.134 3.866 6 N -0.681 5.681 7 C 0.210 3.790 8 H 0.003 0.997 9 C -0.125 4.125 10 C -0.518 4.518 11 H 0.060 0.940 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 N -0.368 5.368 19 O 0.093 5.907 20 H 0.079 0.921 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.169 0.831 24 H 0.038 0.962 25 H 0.086 0.914 26 H 0.334 0.666 27 H 0.032 0.968 28 H 0.082 0.918 29 H 0.005 0.995 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.431 -3.433 -4.668 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.114 4.114 3 C -0.238 4.238 4 C -0.121 4.121 5 C 0.003 3.997 6 N -0.314 5.314 7 C 0.103 3.897 8 H 0.021 0.979 9 C -0.183 4.183 10 C -0.556 4.556 11 H 0.079 0.921 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.726 3.274 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 N -0.073 5.073 19 O 0.027 5.973 20 H 0.098 0.902 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.186 0.814 24 H 0.056 0.944 25 H 0.105 0.895 26 H 0.152 0.848 27 H 0.051 0.949 28 H 0.101 0.899 29 H 0.024 0.976 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.785 -3.786 -4.568 15.008 hybrid contribution 0.866 0.011 0.488 0.994 sum -12.919 -3.775 -4.081 14.064 Atomic orbital electron populations 1.20261 0.84411 1.04221 1.03797 1.24429 0.96193 0.86548 1.04205 1.22393 0.91461 1.00841 1.09136 1.23781 0.97956 0.89516 1.00853 1.20268 0.88315 0.97404 0.93679 1.60813 1.34596 1.23791 1.12202 1.19165 0.83139 0.90950 0.96409 0.97896 1.21724 1.01128 0.98694 0.96753 1.21276 1.02568 1.25130 1.06677 0.92145 1.24913 0.97302 0.94915 0.96847 1.69902 1.18295 1.28745 1.35940 0.86442 0.79643 0.78336 0.82998 1.19743 1.21039 1.20920 1.73830 0.96558 1.16816 1.20132 1.84798 1.11444 1.33194 1.67840 0.90240 0.89414 0.89544 0.81375 0.94358 0.89542 0.84848 0.94856 0.89945 0.97631 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 36.01 0.38 -0.13 16 2 C -0.05 -0.63 7.49 -35.30 -0.26 -0.90 16 3 C -0.22 -3.12 11.06 -39.38 -0.44 -3.55 16 4 C 0.04 0.67 6.84 -82.10 -0.56 0.11 16 5 C 0.13 2.59 6.07 -4.97 -0.03 2.56 16 6 N -0.68 -15.38 6.29 -109.21 -0.69 -16.06 16 7 C 0.21 5.45 2.60 -68.86 -0.18 5.27 16 8 H 0.00 0.10 7.80 -51.93 -0.40 -0.31 16 9 C -0.12 -3.11 9.19 37.16 0.34 -2.77 16 10 C -0.52 -14.53 8.59 -34.44 -0.30 -14.82 16 11 H 0.06 1.69 7.62 -52.49 -0.40 1.29 16 12 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 13 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 14 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 N -0.37 -6.68 12.07 33.42 0.40 -6.28 16 19 O 0.09 1.45 11.20 17.17 0.19 1.64 16 20 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 21 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.17 2.04 8.06 -52.49 -0.42 1.61 16 24 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 25 H 0.09 1.58 7.44 -51.93 -0.39 1.19 16 26 H 0.33 7.71 8.21 -39.29 -0.32 7.39 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 29 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 260.91 15.07 3.93 3.93 Total: -1.00 -30.43 260.91 -5.58 -36.01 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -3.88 Total: 1.79 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -1.14 Total: -12.59 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.34 Total: -47.31 kcal Atomic # 8 Polarization: 1.45 SS G_CDS: 0.19 Total: 1.64 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.43 -5.58 -36.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044724820.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.270 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds