Wall clock time and date at job start Sun Mar 29 2020 21:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35449 * 126.77485 * 2 1 4 4 C 1.41383 * 103.98299 * 180.10002 * 3 2 1 5 5 C 1.50701 * 126.79957 * 179.88628 * 4 3 2 6 6 N 1.46901 * 109.46921 * 94.70567 * 5 4 3 7 7 C 1.46906 * 110.99793 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47279 * 325.00167 * 7 6 5 9 9 C 1.52995 * 109.46946 * 85.00144 * 7 6 5 10 10 C 1.50701 * 109.46893 * 205.00308 * 7 6 5 11 11 H 1.07996 * 120.00253 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99674 * 180.02562 * 10 7 6 13 13 N 1.31513 * 120.00353 * 359.97438 * 12 10 7 14 14 Si 1.86796 * 119.99967 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47200 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47268 * 119.99842 * 14 12 10 17 17 H 1.48506 * 109.47301 * 239.99804 * 14 12 10 18 18 N 1.30174 * 106.39727 * 359.61974 * 4 3 2 19 19 O 1.20918 * 111.60331 * 0.24566 * 18 4 3 20 20 H 1.09003 * 109.46971 * 180.30719 * 1 2 3 21 21 H 1.09007 * 109.47399 * 300.29896 * 1 2 3 22 22 H 1.08993 * 109.47266 * 60.30286 * 1 2 3 23 23 H 1.07999 * 128.01233 * 359.95491 * 3 2 1 24 24 H 1.09002 * 109.47060 * 214.70748 * 5 4 3 25 25 H 1.09001 * 109.47380 * 334.70836 * 5 4 3 26 26 H 1.00898 * 110.99877 * 56.04636 * 6 5 4 27 27 H 1.09003 * 109.47112 * 59.99921 * 9 7 6 28 28 H 1.09001 * 109.47056 * 179.97438 * 9 7 6 29 29 H 1.09000 * 109.47395 * 299.99746 * 9 7 6 30 30 H 0.97002 * 120.00598 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0024 5 6 4.9210 1.3000 -0.0058 6 7 5.4038 1.4510 1.3734 7 6 6.6723 2.1910 1.4091 8 1 7.2658 1.9374 0.5306 9 6 6.3860 3.6939 1.4145 10 6 7.4352 1.8204 2.6548 11 1 7.0195 1.1063 3.3501 12 6 8.6638 2.3931 2.9067 13 7 9.1703 3.2624 2.0596 14 14 9.6092 1.9343 4.4511 15 1 8.8278 0.9431 5.2336 16 1 10.9191 1.3456 4.0731 17 1 9.8319 3.1499 5.2746 18 7 3.4764 -0.7564 0.0047 19 8 2.3095 -1.0736 0.0062 20 1 -0.3633 -1.0277 0.0055 21 1 -0.3634 0.5185 0.8873 22 1 -0.3633 0.5091 -0.8926 23 1 2.0345 2.1271 -0.0007 24 1 5.6607 0.7549 -0.5921 25 1 4.7632 2.2850 -0.4453 26 1 5.4965 0.5531 1.8243 27 1 5.7925 3.9475 2.2929 28 1 7.3272 4.2430 1.4414 29 1 5.8342 3.9620 0.5135 30 1 10.0345 3.6656 2.2370 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044724820.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:22 Heat of formation + Delta-G solvation = 32.467155 kcal Electronic energy + Delta-G solvation = -13442.738800 eV Core-core repulsion = 11047.312140 eV Total energy + Delta-G solvation = -2395.426660 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.89917 -38.09198 -35.59655 -34.42900 -33.74752 -30.64415 -28.59333 -27.53439 -26.47737 -23.98207 -21.89184 -20.94516 -18.69780 -18.62691 -18.06804 -16.93610 -16.01969 -15.73977 -15.46490 -14.75490 -14.48543 -13.97839 -13.89793 -13.62498 -13.22524 -13.10079 -12.81615 -12.75547 -12.36435 -12.24347 -12.05268 -11.96045 -11.15353 -10.90361 -10.61412 -10.20192 -9.23564 -8.17615 -6.32123 0.57836 1.25917 1.39583 1.41051 1.53329 2.32109 2.39299 3.11001 3.18266 3.56518 3.72716 4.18175 4.31891 4.37773 4.59432 4.69564 4.80541 4.81830 4.96683 5.04014 5.07213 5.15078 5.32019 5.41512 5.60879 5.79438 6.17126 6.32312 6.61389 6.86847 7.37849 7.38135 8.88393 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.059619 B = 0.006133 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.534001 B = 4564.238139 C = 4765.701089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.030 4.030 3 C -0.230 4.230 4 C 0.014 3.986 5 C 0.139 3.861 6 N -0.677 5.677 7 C 0.214 3.786 8 H -0.027 1.027 9 C -0.112 4.112 10 C -0.542 4.542 11 H 0.054 0.946 12 C 0.016 3.984 13 N -0.915 5.915 14 Si 0.965 3.035 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.276 1.276 18 N -0.401 5.401 19 O 0.091 5.909 20 H 0.094 0.906 21 H 0.106 0.894 22 H 0.111 0.889 23 H 0.191 0.809 24 H 0.024 0.976 25 H 0.098 0.902 26 H 0.328 0.672 27 H 0.030 0.970 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.195 -3.464 -4.260 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.094 4.094 3 C -0.251 4.251 4 C -0.144 4.144 5 C 0.009 3.991 6 N -0.308 5.308 7 C 0.106 3.894 8 H -0.010 1.010 9 C -0.171 4.171 10 C -0.580 4.580 11 H 0.073 0.927 12 C -0.184 4.184 13 N -0.554 5.554 14 Si 0.790 3.210 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.201 1.201 18 N -0.107 5.107 19 O 0.025 5.975 20 H 0.113 0.887 21 H 0.124 0.876 22 H 0.129 0.871 23 H 0.208 0.792 24 H 0.043 0.957 25 H 0.116 0.884 26 H 0.145 0.855 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.559 -3.816 -4.171 16.554 hybrid contribution 1.311 -0.008 0.303 1.345 sum -14.248 -3.824 -3.868 15.251 Atomic orbital electron populations 1.20575 0.80233 1.05960 1.05762 1.25347 0.98117 0.84945 1.00976 1.22664 0.90055 1.02461 1.09970 1.23667 0.98346 0.89842 1.02551 1.20181 0.89106 0.98232 0.91600 1.60750 1.32531 1.23225 1.14288 1.19006 0.84028 0.91946 0.94451 1.00963 1.21536 1.00150 0.97647 0.97751 1.21558 1.03514 1.25496 1.07446 0.92732 1.25714 0.98094 0.94716 0.99864 1.70013 1.18687 1.29274 1.37438 0.85409 0.78164 0.78214 0.79227 1.19444 1.20468 1.20115 1.73817 0.98101 1.17276 1.21459 1.84750 1.11022 1.34252 1.67463 0.88686 0.87596 0.87087 0.79198 0.95746 0.88425 0.85516 0.95094 0.92180 0.95256 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.45 71.24 0.74 0.02 16 2 C -0.03 -0.68 7.49 25.04 0.19 -0.50 16 3 C -0.23 -6.17 11.06 22.40 0.25 -5.92 16 4 C 0.01 0.48 6.84 43.58 0.30 0.78 16 5 C 0.14 5.44 6.07 85.56 0.52 5.96 16 6 N -0.68 -30.94 6.29 -499.44 -3.14 -34.09 16 7 C 0.21 11.29 2.60 44.17 0.11 11.40 16 8 H -0.03 -1.57 7.80 -2.39 -0.02 -1.59 16 9 C -0.11 -5.64 9.19 71.98 0.66 -4.97 16 10 C -0.54 -30.82 8.59 25.60 0.22 -30.60 16 11 H 0.05 3.09 7.62 -2.91 -0.02 3.07 16 12 C 0.02 0.88 5.30 84.66 0.45 1.33 16 13 N -0.92 -53.11 11.32 21.45 0.24 -52.86 16 14 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 N -0.40 -14.52 12.07 -49.57 -0.60 -15.12 16 19 O 0.09 2.73 11.20 71.61 0.80 3.53 16 20 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 21 H 0.11 0.84 8.14 -2.38 -0.02 0.83 16 22 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.19 4.09 8.06 -2.91 -0.02 4.07 16 24 H 0.02 1.02 8.05 -2.39 -0.02 1.00 16 25 H 0.10 3.54 7.44 -2.39 -0.02 3.53 16 26 H 0.33 15.53 8.21 -89.70 -0.74 14.79 16 27 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 29 H 0.03 1.27 7.45 -2.39 -0.02 1.26 16 30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -65.88 260.91 3.18 -62.70 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.40 Total: 12.05 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 3.44 Total: -22.50 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -3.50 Total: -102.07 kcal Atomic # 8 Polarization: 2.73 SS G_CDS: 0.80 Total: 3.53 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -65.88 3.18 -62.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044724820.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.171 kcal (2) G-P(sol) polarization free energy of solvation -65.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds