Wall clock time and date at job start Sun Mar 29 2020 21:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35444 * 126.77838 * 2 1 4 4 C 1.41383 * 103.98821 * 179.97438 * 3 2 1 5 5 C 1.50693 * 126.80564 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47119 * 94.99971 * 5 4 3 7 7 C 1.46900 * 111.00243 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.46972 * 35.00638 * 7 6 5 9 9 C 1.53001 * 109.47113 * 274.99873 * 7 6 5 10 10 C 1.50697 * 109.46791 * 155.00251 * 7 6 5 11 11 H 1.08008 * 120.00474 * 34.99777 * 10 7 6 12 12 C 1.37881 * 119.99764 * 214.99470 * 10 7 6 13 13 N 1.31519 * 119.99639 * 184.91523 * 12 10 7 14 14 Si 1.86796 * 120.00170 * 4.91762 * 12 10 7 15 15 H 1.48503 * 109.46959 * 84.82795 * 14 12 10 16 16 H 1.48492 * 109.47292 * 204.82916 * 14 12 10 17 17 H 1.48501 * 109.46907 * 324.82973 * 14 12 10 18 18 N 1.30181 * 106.39313 * 0.26203 * 4 3 2 19 19 O 1.20921 * 111.60428 * 359.53571 * 18 4 3 20 20 H 1.09000 * 109.46603 * 90.00012 * 1 2 3 21 21 H 1.08998 * 109.47288 * 210.00049 * 1 2 3 22 22 H 1.08994 * 109.46869 * 330.00010 * 1 2 3 23 23 H 1.07999 * 128.01166 * 359.94314 * 3 2 1 24 24 H 1.08991 * 109.47646 * 215.00020 * 5 4 3 25 25 H 1.09001 * 109.47316 * 335.00355 * 5 4 3 26 26 H 1.00908 * 110.99964 * 56.04857 * 6 5 4 27 27 H 1.08994 * 109.47080 * 175.04412 * 9 7 6 28 28 H 1.08992 * 109.47242 * 295.05007 * 9 7 6 29 29 H 1.09009 * 109.46667 * 55.04558 * 9 7 6 30 30 H 0.97001 * 119.99537 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 0.0006 5 6 4.9211 1.2998 0.0003 6 7 5.4043 1.4445 1.3801 7 6 6.6722 2.1853 1.4190 8 1 6.6708 2.9491 0.6414 9 6 7.8349 1.2191 1.1828 10 6 6.8298 2.8409 2.7667 11 1 6.4632 2.3462 3.6541 12 6 7.4420 4.0722 2.8670 13 7 7.6665 4.6005 4.0503 14 14 7.9525 4.9901 1.3223 15 1 6.7963 5.7622 0.8004 16 1 9.0644 5.9203 1.6439 17 1 8.4026 4.0173 0.2945 18 7 3.4764 -0.7565 -0.0048 19 8 2.3096 -1.0737 0.0006 20 1 -0.3632 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 2.0346 2.1270 -0.0008 24 1 5.6607 0.7574 -0.5885 25 1 4.7632 2.2868 -0.4346 26 1 5.4971 0.5445 1.8269 27 1 8.7674 1.7803 1.1239 28 1 7.8899 0.5084 2.0073 29 1 7.6754 0.6803 0.2487 30 1 8.0969 5.4669 4.1208 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044724822.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:24 Heat of formation + Delta-G solvation = 55.780335 kcal Electronic energy + Delta-G solvation = -13493.745219 eV Core-core repulsion = 11099.329495 eV Total energy + Delta-G solvation = -2394.415725 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.70809 -36.58610 -34.09635 -33.26584 -32.06877 -29.45293 -27.74557 -25.45981 -24.89417 -22.79346 -20.06143 -19.80598 -17.44794 -17.21494 -16.78714 -14.95371 -14.53890 -14.27485 -13.86379 -13.55559 -13.34763 -12.92854 -12.50573 -12.35487 -12.12676 -11.97563 -11.49015 -11.05889 -10.84192 -10.72492 -10.23932 -9.91669 -9.69779 -9.18483 -9.17278 -8.53150 -7.45498 -6.05967 -4.03379 1.62744 2.45533 3.25821 3.27659 3.35156 3.35809 4.41091 4.42137 4.58715 5.06523 5.14080 5.25800 5.28536 5.44145 5.46939 5.70883 5.73963 5.93522 6.07702 6.20830 6.31197 6.37271 6.58233 6.76410 7.12509 7.66282 7.89306 8.27893 8.48975 8.64930 9.02033 9.56148 11.07660 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.048926 B = 0.006854 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.161227 B = 4083.976749 C = 4226.277854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.048 4.048 3 C -0.215 4.215 4 C 0.037 3.963 5 C 0.130 3.870 6 N -0.667 5.667 7 C 0.180 3.820 8 H 0.038 0.962 9 C -0.172 4.172 10 C -0.491 4.491 11 H 0.076 0.924 12 C 0.070 3.930 13 N -0.900 5.900 14 Si 0.876 3.124 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.268 1.268 18 N -0.369 5.369 19 O 0.093 5.907 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.170 0.830 24 H 0.038 0.962 25 H 0.087 0.913 26 H 0.332 0.668 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.020 0.980 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.714 -6.692 -10.103 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.112 4.112 3 C -0.236 4.236 4 C -0.122 4.122 5 C -0.001 4.001 6 N -0.299 5.299 7 C 0.072 3.928 8 H 0.056 0.944 9 C -0.231 4.231 10 C -0.530 4.530 11 H 0.094 0.906 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.703 3.297 15 H -0.201 1.201 16 H -0.215 1.215 17 H -0.193 1.193 18 N -0.075 5.075 19 O 0.027 5.973 20 H 0.102 0.898 21 H 0.099 0.901 22 H 0.108 0.892 23 H 0.187 0.813 24 H 0.056 0.944 25 H 0.105 0.895 26 H 0.149 0.851 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.162 -6.991 -9.889 16.470 hybrid contribution 0.645 0.762 -1.052 1.450 sum -10.517 -6.230 -10.940 16.404 Atomic orbital electron populations 1.20269 0.84326 1.04470 1.03648 1.24435 0.96220 0.86442 1.04058 1.22426 0.91399 1.00938 1.08866 1.23692 0.97884 0.89557 1.01076 1.20323 0.88511 0.97602 0.93631 1.61012 1.33496 1.23236 1.12140 1.19693 0.82976 0.91848 0.98258 0.94384 1.22650 1.01764 1.00395 0.98335 1.20838 1.36893 1.03321 0.91957 0.90558 1.24977 0.95386 0.97051 0.95731 1.69895 1.43150 1.18024 1.22731 0.86900 0.78527 0.80039 0.84200 1.20108 1.21458 1.19302 1.73814 0.96720 1.16705 1.20252 1.84783 1.11401 1.33196 1.67917 0.89823 0.90101 0.89165 0.81256 0.94436 0.89468 0.85104 0.93026 0.93133 0.96053 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 36.01 0.38 -0.13 16 2 C -0.05 -0.60 7.49 -35.30 -0.26 -0.86 16 3 C -0.21 -3.06 11.06 -39.38 -0.44 -3.49 16 4 C 0.04 0.63 6.84 -82.10 -0.56 0.07 16 5 C 0.13 2.36 6.07 -4.98 -0.03 2.33 16 6 N -0.67 -14.35 6.22 -109.23 -0.68 -15.03 16 7 C 0.18 4.28 2.23 -68.87 -0.15 4.13 16 8 H 0.04 0.91 4.95 -51.93 -0.26 0.66 16 9 C -0.17 -3.71 9.16 37.16 0.34 -3.37 16 10 C -0.49 -13.93 9.19 -34.44 -0.32 -14.25 16 11 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 14 Si 0.88 21.44 26.99 -169.99 -4.59 16.86 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.27 -6.25 6.82 56.52 0.39 -5.87 16 18 N -0.37 -6.41 12.07 33.42 0.40 -6.00 16 19 O 0.09 1.40 11.20 17.15 0.19 1.59 16 20 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.17 2.07 8.06 -52.49 -0.42 1.65 16 24 H 0.04 0.67 7.36 -51.93 -0.38 0.29 16 25 H 0.09 1.51 8.05 -51.93 -0.42 1.09 16 26 H 0.33 7.04 8.47 -39.29 -0.33 6.71 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.02 0.40 7.36 -51.92 -0.38 0.02 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 260.76 15.07 3.93 3.93 Total: -1.00 -31.62 260.76 -4.99 -36.61 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.88 Total: 2.49 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -1.14 Total: -13.65 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.50 Total: -47.83 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.19 Total: 1.59 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.59 Total: 16.86 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.62 -4.99 -36.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044724822.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.395 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds