Wall clock time and date at job start Sun Mar 29 2020 21:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35449 * 126.77666 * 2 1 4 4 C 1.41384 * 103.98247 * 180.09787 * 3 2 1 5 5 C 1.50704 * 126.80045 * 179.89060 * 4 3 2 6 6 N 1.46895 * 109.47030 * 94.70653 * 5 4 3 7 7 C 1.46906 * 110.99789 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47053 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46999 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00290 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00355 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99521 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00556 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47278 * 89.99815 * 13 11 9 15 15 H 1.48498 * 109.47109 * 210.00244 * 13 11 9 16 16 H 1.48502 * 109.46821 * 329.99631 * 13 11 9 17 17 N 1.30172 * 106.39248 * 359.62177 * 4 3 2 18 18 O 1.20918 * 111.60863 * 0.24437 * 17 4 3 19 19 H 1.08993 * 109.47294 * 180.30384 * 1 2 3 20 20 H 1.09004 * 109.47103 * 300.30526 * 1 2 3 21 21 H 1.09002 * 109.46461 * 60.30214 * 1 2 3 22 22 H 1.07995 * 128.01069 * 359.95913 * 3 2 1 23 23 H 1.08996 * 109.46908 * 334.70471 * 5 4 3 24 24 H 1.09002 * 109.46622 * 214.70645 * 5 4 3 25 25 H 1.00902 * 111.00273 * 303.95312 * 6 5 4 26 26 H 1.08992 * 109.47459 * 299.99826 * 7 6 5 27 27 H 1.09004 * 109.47040 * 59.99976 * 7 6 5 28 28 H 1.09001 * 109.47142 * 300.00160 * 8 7 6 29 29 H 1.09004 * 109.47006 * 60.00213 * 8 7 6 30 30 H 0.96999 * 120.00022 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0023 5 6 4.9212 1.2999 -0.0056 6 7 5.4039 1.4507 1.3735 7 6 6.6725 2.1907 1.4093 8 6 7.1422 2.3279 2.8589 9 6 8.4438 3.0864 2.8956 10 1 8.8911 3.4361 1.9768 11 6 9.0637 3.3341 4.1019 12 7 8.5193 2.9078 5.2207 13 14 10.6768 4.2749 4.1474 14 1 10.3989 5.7281 4.2748 15 1 11.4819 3.8211 5.3098 16 1 11.4321 4.0234 2.8938 17 7 3.4763 -0.7564 0.0048 18 8 2.3095 -1.0736 0.0062 19 1 -0.3633 -1.0276 0.0054 20 1 -0.3633 0.5186 0.8873 21 1 -0.3632 0.5092 -0.8927 22 1 2.0346 2.1270 -0.0006 23 1 4.7633 2.2848 -0.4451 24 1 5.6608 0.7546 -0.5920 25 1 4.7086 1.8962 1.9533 26 1 7.4241 1.6514 0.8330 27 1 6.5272 3.1818 0.9794 28 1 6.3904 2.8675 3.4349 29 1 7.2873 1.3369 3.2891 30 1 8.9556 3.0817 6.0694 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044724900.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:20 Heat of formation + Delta-G solvation = 47.113420 kcal Electronic energy + Delta-G solvation = -13005.131944 eV Core-core repulsion = 10610.340394 eV Total energy + Delta-G solvation = -2394.791550 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.85756 -36.46015 -34.10940 -33.39981 -32.52768 -29.56249 -27.87322 -26.05177 -23.57337 -22.78790 -20.71058 -19.87432 -17.57381 -17.13918 -16.30300 -15.48707 -14.53769 -14.42396 -13.95906 -13.84341 -13.48902 -13.44644 -12.67201 -12.50688 -12.16886 -11.84282 -11.16155 -10.94308 -10.91712 -10.57366 -10.15942 -10.02170 -9.42659 -9.29714 -9.13988 -8.35373 -7.89810 -5.99451 -4.02410 1.49792 2.27805 3.12735 3.32440 3.38638 3.42178 4.25316 4.40112 4.46537 4.88727 5.01980 5.13688 5.15380 5.27758 5.36470 5.48984 5.55707 5.78034 5.85959 6.08579 6.28946 6.35461 6.94313 7.39404 7.70081 7.78377 7.91056 8.07256 8.38604 8.42411 9.04744 9.61391 11.12059 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.082724 B = 0.004649 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.395727 B = 6021.556115 C = 6103.673572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.042 4.042 3 C -0.232 4.232 4 C 0.029 3.971 5 C 0.134 3.866 6 N -0.685 5.685 7 C 0.067 3.933 8 C 0.025 3.975 9 C -0.522 4.522 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 N -0.349 5.349 18 O 0.098 5.902 19 H 0.081 0.919 20 H 0.089 0.911 21 H 0.087 0.913 22 H 0.168 0.832 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.338 0.662 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.014 0.986 29 H 0.026 0.974 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.609 -2.831 -10.841 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.254 4.254 4 C -0.131 4.131 5 C 0.004 3.996 6 N -0.317 5.317 7 C -0.061 4.061 8 C -0.013 4.013 9 C -0.561 4.561 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.532 5.532 13 Si 0.722 3.278 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 N -0.052 5.052 18 O 0.030 5.970 19 H 0.100 0.900 20 H 0.107 0.893 21 H 0.106 0.894 22 H 0.186 0.814 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.156 0.844 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.397 -4.489 -10.643 18.458 hybrid contribution 0.258 2.259 -0.017 2.273 sum -14.139 -2.230 -10.660 17.847 Atomic orbital electron populations 1.20299 0.84255 1.04473 1.03901 1.24461 0.96310 0.86445 1.03369 1.22431 0.91611 1.00933 1.10389 1.23584 0.97104 0.89981 1.02393 1.20205 0.89823 0.96539 0.93052 1.60564 1.06993 1.56888 1.07284 1.22207 0.88441 0.93545 1.01920 1.19076 0.95646 0.97658 0.88886 1.21164 1.06695 1.35537 0.92723 0.92680 1.25010 0.97722 0.95946 0.95692 1.69979 1.39361 1.46196 0.97693 0.86568 0.83628 0.80004 0.77638 1.20694 1.21171 1.19851 1.73864 0.96245 1.16625 1.18491 1.84847 1.11500 1.33223 1.67389 0.90034 0.89284 0.89421 0.81396 0.93383 0.89623 0.84418 0.92045 0.96324 0.96751 0.95556 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.45 36.01 0.38 -0.05 16 2 C -0.04 -0.46 7.49 -35.30 -0.26 -0.73 16 3 C -0.23 -2.79 11.06 -39.38 -0.44 -3.22 16 4 C 0.03 0.44 6.84 -82.10 -0.56 -0.12 16 5 C 0.13 2.11 6.27 -4.98 -0.03 2.08 16 6 N -0.69 -13.04 6.49 -115.06 -0.75 -13.78 16 7 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16 8 C 0.02 0.66 5.23 -27.88 -0.15 0.52 16 9 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 13 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 17 N -0.35 -5.80 12.07 33.42 0.40 -5.40 16 18 O 0.10 1.38 11.20 17.19 0.19 1.57 16 19 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 20 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.34 6.18 8.72 -39.29 -0.34 5.84 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 267.54 15.07 4.03 4.03 Total: -1.00 -32.58 267.54 -6.01 -38.59 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.11 Total: -1.41 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.49 Total: -13.88 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.39 Total: -45.74 kcal Atomic # 8 Polarization: 1.38 SS G_CDS: 0.19 Total: 1.57 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.58 -6.01 -38.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044724900.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.705 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds