Wall clock time and date at job start Sun Mar 29 2020 21:35:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.35449 * 126.77666 * 2 1
4 4 C 1.41384 * 103.98247 * 180.09787 * 3 2 1
5 5 C 1.50704 * 126.80045 * 179.89060 * 4 3 2
6 6 N 1.46895 * 109.47030 * 94.70653 * 5 4 3
7 7 C 1.46906 * 110.99789 * 179.97438 * 6 5 4
8 8 C 1.53002 * 109.47053 * 179.97438 * 7 6 5
9 9 C 1.50696 * 109.46999 * 179.97438 * 8 7 6
10 10 H 1.08000 * 120.00290 * 0.02562 * 9 8 7
11 11 C 1.37875 * 120.00355 * 180.02562 * 9 8 7
12 12 N 1.31520 * 119.99521 * 0.02562 * 11 9 8
13 13 Si 1.86800 * 120.00556 * 180.02562 * 11 9 8
14 14 H 1.48498 * 109.47278 * 89.99815 * 13 11 9
15 15 H 1.48498 * 109.47109 * 210.00244 * 13 11 9
16 16 H 1.48502 * 109.46821 * 329.99631 * 13 11 9
17 17 N 1.30172 * 106.39248 * 359.62177 * 4 3 2
18 18 O 1.20918 * 111.60863 * 0.24437 * 17 4 3
19 19 H 1.08993 * 109.47294 * 180.30384 * 1 2 3
20 20 H 1.09004 * 109.47103 * 300.30526 * 1 2 3
21 21 H 1.09002 * 109.46461 * 60.30214 * 1 2 3
22 22 H 1.07995 * 128.01069 * 359.95913 * 3 2 1
23 23 H 1.08996 * 109.46908 * 334.70471 * 5 4 3
24 24 H 1.09002 * 109.46622 * 214.70645 * 5 4 3
25 25 H 1.00902 * 111.00273 * 303.95312 * 6 5 4
26 26 H 1.08992 * 109.47459 * 299.99826 * 7 6 5
27 27 H 1.09004 * 109.47040 * 59.99976 * 7 6 5
28 28 H 1.09001 * 109.47142 * 300.00160 * 8 7 6
29 29 H 1.09004 * 109.47006 * 60.00213 * 8 7 6
30 30 H 0.96999 * 120.00022 * 179.97438 * 12 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3180 1.0849 0.0000
4 6 3.6214 0.5372 -0.0023
5 6 4.9212 1.2999 -0.0056
6 7 5.4039 1.4507 1.3735
7 6 6.6725 2.1907 1.4093
8 6 7.1422 2.3279 2.8589
9 6 8.4438 3.0864 2.8956
10 1 8.8911 3.4361 1.9768
11 6 9.0637 3.3341 4.1019
12 7 8.5193 2.9078 5.2207
13 14 10.6768 4.2749 4.1474
14 1 10.3989 5.7281 4.2748
15 1 11.4819 3.8211 5.3098
16 1 11.4321 4.0234 2.8938
17 7 3.4763 -0.7564 0.0048
18 8 2.3095 -1.0736 0.0062
19 1 -0.3633 -1.0276 0.0054
20 1 -0.3633 0.5186 0.8873
21 1 -0.3632 0.5092 -0.8927
22 1 2.0346 2.1270 -0.0006
23 1 4.7633 2.2848 -0.4451
24 1 5.6608 0.7546 -0.5920
25 1 4.7086 1.8962 1.9533
26 1 7.4241 1.6514 0.8330
27 1 6.5272 3.1818 0.9794
28 1 6.3904 2.8675 3.4349
29 1 7.2873 1.3369 3.2891
30 1 8.9556 3.0817 6.0694
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000044724900.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:35:20
Heat of formation + Delta-G solvation = 47.113420 kcal
Electronic energy + Delta-G solvation = -13005.131944 eV
Core-core repulsion = 10610.340394 eV
Total energy + Delta-G solvation = -2394.791550 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 210.111 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-44.85756 -36.46015 -34.10940 -33.39981 -32.52768 -29.56249 -27.87322 -26.05177
-23.57337 -22.78790 -20.71058 -19.87432 -17.57381 -17.13918 -16.30300 -15.48707
-14.53769 -14.42396 -13.95906 -13.84341 -13.48902 -13.44644 -12.67201 -12.50688
-12.16886 -11.84282 -11.16155 -10.94308 -10.91712 -10.57366 -10.15942 -10.02170
-9.42659 -9.29714 -9.13988 -8.35373 -7.89810 -5.99451 -4.02410 1.49792
2.27805 3.12735 3.32440 3.38638 3.42178 4.25316 4.40112 4.46537
4.88727 5.01980 5.13688 5.15380 5.27758 5.36470 5.48984 5.55707
5.78034 5.85959 6.08579 6.28946 6.35461 6.94313 7.39404 7.70081
7.78377 7.91056 8.07256 8.38604 8.42411 9.04744 9.61391 11.12059
Molecular weight = 210.11amu
Principal moments of inertia in cm(-1)
A = 0.082724 B = 0.004649 C = 0.004586
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 338.395727 B = 6021.556115 C = 6103.673572
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C -0.042 4.042
3 C -0.232 4.232
4 C 0.029 3.971
5 C 0.134 3.866
6 N -0.685 5.685
7 C 0.067 3.933
8 C 0.025 3.975
9 C -0.522 4.522
10 H 0.055 0.945
11 C 0.058 3.942
12 N -0.893 5.893
13 Si 0.894 3.106
14 H -0.281 1.281
15 H -0.286 1.286
16 H -0.274 1.274
17 N -0.349 5.349
18 O 0.098 5.902
19 H 0.081 0.919
20 H 0.089 0.911
21 H 0.087 0.913
22 H 0.168 0.832
23 H 0.048 0.952
24 H 0.085 0.915
25 H 0.338 0.662
26 H 0.061 0.939
27 H 0.018 0.982
28 H 0.014 0.986
29 H 0.026 0.974
30 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.609 -2.831 -10.841 19.214
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.106 4.106
3 C -0.254 4.254
4 C -0.131 4.131
5 C 0.004 3.996
6 N -0.317 5.317
7 C -0.061 4.061
8 C -0.013 4.013
9 C -0.561 4.561
10 H 0.073 0.927
11 C -0.144 4.144
12 N -0.532 5.532
13 Si 0.722 3.278
14 H -0.207 1.207
15 H -0.212 1.212
16 H -0.199 1.199
17 N -0.052 5.052
18 O 0.030 5.970
19 H 0.100 0.900
20 H 0.107 0.893
21 H 0.106 0.894
22 H 0.186 0.814
23 H 0.066 0.934
24 H 0.104 0.896
25 H 0.156 0.844
26 H 0.080 0.920
27 H 0.037 0.963
28 H 0.032 0.968
29 H 0.044 0.956
30 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -14.397 -4.489 -10.643 18.458
hybrid contribution 0.258 2.259 -0.017 2.273
sum -14.139 -2.230 -10.660 17.847
Atomic orbital electron populations
1.20299 0.84255 1.04473 1.03901 1.24461 0.96310 0.86445 1.03369
1.22431 0.91611 1.00933 1.10389 1.23584 0.97104 0.89981 1.02393
1.20205 0.89823 0.96539 0.93052 1.60564 1.06993 1.56888 1.07284
1.22207 0.88441 0.93545 1.01920 1.19076 0.95646 0.97658 0.88886
1.21164 1.06695 1.35537 0.92723 0.92680 1.25010 0.97722 0.95946
0.95692 1.69979 1.39361 1.46196 0.97693 0.86568 0.83628 0.80004
0.77638 1.20694 1.21171 1.19851 1.73864 0.96245 1.16625 1.18491
1.84847 1.11500 1.33223 1.67389 0.90034 0.89284 0.89421 0.81396
0.93383 0.89623 0.84418 0.92045 0.96324 0.96751 0.95556 0.92961
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.43 10.45 36.01 0.38 -0.05 16
2 C -0.04 -0.46 7.49 -35.30 -0.26 -0.73 16
3 C -0.23 -2.79 11.06 -39.38 -0.44 -3.22 16
4 C 0.03 0.44 6.84 -82.10 -0.56 -0.12 16
5 C 0.13 2.11 6.27 -4.98 -0.03 2.08 16
6 N -0.69 -13.04 6.49 -115.06 -0.75 -13.78 16
7 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16
8 C 0.02 0.66 5.23 -27.88 -0.15 0.52 16
9 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16
10 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16
11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
12 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16
13 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16
14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
16 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16
17 N -0.35 -5.80 12.07 33.42 0.40 -5.40 16
18 O 0.10 1.38 11.20 17.19 0.19 1.57 16
19 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16
20 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16
21 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16
22 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16
23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16
24 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16
25 H 0.34 6.18 8.72 -39.29 -0.34 5.84 16
26 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16
27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
28 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16
29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
LS Contribution 267.54 15.07 4.03 4.03
Total: -1.00 -32.58 267.54 -6.01 -38.59
By element:
Atomic # 1 Polarization: 2.71 SS G_CDS: -4.11 Total: -1.41 kcal
Atomic # 6 Polarization: -12.39 SS G_CDS: -1.49 Total: -13.88 kcal
Atomic # 7 Polarization: -46.14 SS G_CDS: 0.39 Total: -45.74 kcal
Atomic # 8 Polarization: 1.38 SS G_CDS: 0.19 Total: 1.57 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal
Total LS contribution 4.03 Total: 4.03 kcal
Total: -32.58 -6.01 -38.59 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000044724900.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.705 kcal
(2) G-P(sol) polarization free energy of solvation -32.581 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.123 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.113 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds