Wall clock time and date at job start Sun Mar 29 2020 21:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35449 * 126.77666 * 2 1 4 4 C 1.41384 * 103.98247 * 180.09787 * 3 2 1 5 5 C 1.50704 * 126.80045 * 179.89060 * 4 3 2 6 6 N 1.46895 * 109.47030 * 94.70653 * 5 4 3 7 7 C 1.46906 * 110.99789 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47053 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46999 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00290 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00355 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99521 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00556 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47278 * 89.99815 * 13 11 9 15 15 H 1.48498 * 109.47109 * 210.00244 * 13 11 9 16 16 H 1.48502 * 109.46821 * 329.99631 * 13 11 9 17 17 N 1.30172 * 106.39248 * 359.62177 * 4 3 2 18 18 O 1.20918 * 111.60863 * 0.24437 * 17 4 3 19 19 H 1.08993 * 109.47294 * 180.30384 * 1 2 3 20 20 H 1.09004 * 109.47103 * 300.30526 * 1 2 3 21 21 H 1.09002 * 109.46461 * 60.30214 * 1 2 3 22 22 H 1.07995 * 128.01069 * 359.95913 * 3 2 1 23 23 H 1.08996 * 109.46908 * 334.70471 * 5 4 3 24 24 H 1.09002 * 109.46622 * 214.70645 * 5 4 3 25 25 H 1.00902 * 111.00273 * 303.95312 * 6 5 4 26 26 H 1.08992 * 109.47459 * 299.99826 * 7 6 5 27 27 H 1.09004 * 109.47040 * 59.99976 * 7 6 5 28 28 H 1.09001 * 109.47142 * 300.00160 * 8 7 6 29 29 H 1.09004 * 109.47006 * 60.00213 * 8 7 6 30 30 H 0.96999 * 120.00022 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0023 5 6 4.9212 1.2999 -0.0056 6 7 5.4039 1.4507 1.3735 7 6 6.6725 2.1907 1.4093 8 6 7.1422 2.3279 2.8589 9 6 8.4438 3.0864 2.8956 10 1 8.8911 3.4361 1.9768 11 6 9.0637 3.3341 4.1019 12 7 8.5193 2.9078 5.2207 13 14 10.6768 4.2749 4.1474 14 1 10.3989 5.7281 4.2748 15 1 11.4819 3.8211 5.3098 16 1 11.4321 4.0234 2.8938 17 7 3.4763 -0.7564 0.0048 18 8 2.3095 -1.0736 0.0062 19 1 -0.3633 -1.0276 0.0054 20 1 -0.3633 0.5186 0.8873 21 1 -0.3632 0.5092 -0.8927 22 1 2.0346 2.1270 -0.0006 23 1 4.7633 2.2848 -0.4451 24 1 5.6608 0.7546 -0.5920 25 1 4.7086 1.8962 1.9533 26 1 7.4241 1.6514 0.8330 27 1 6.5272 3.1818 0.9794 28 1 6.3904 2.8675 3.4349 29 1 7.2873 1.3369 3.2891 30 1 8.9556 3.0817 6.0694 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044724900.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:20 Heat of formation + Delta-G solvation = 24.157925 kcal Electronic energy + Delta-G solvation = -13006.127369 eV Core-core repulsion = 10610.340394 eV Total energy + Delta-G solvation = -2395.786975 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.91696 -37.95209 -35.60245 -34.62635 -34.03803 -31.41677 -28.61825 -27.67865 -25.35949 -23.89940 -22.55630 -20.99535 -18.69367 -18.48370 -18.13388 -16.95196 -16.45741 -15.72154 -15.48055 -14.78179 -14.69367 -14.22973 -14.03022 -13.91271 -13.48505 -13.16976 -12.92707 -12.84217 -12.45474 -12.10584 -11.90282 -11.54598 -11.38963 -11.06714 -10.58073 -10.22630 -9.40803 -8.21637 -6.33808 0.56671 1.21805 1.40414 1.42472 1.53683 2.29868 2.40233 3.11988 3.15175 3.36953 3.65687 4.14815 4.27390 4.27986 4.47689 4.54223 4.61591 4.67138 4.77999 4.94942 5.01671 5.02177 5.29596 5.40855 5.61662 5.74169 6.04360 6.18993 6.40722 6.83317 7.35853 7.38056 8.90862 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.082724 B = 0.004649 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.395727 B = 6021.556115 C = 6103.673572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.030 4.030 3 C -0.239 4.239 4 C 0.009 3.991 5 C 0.138 3.862 6 N -0.698 5.698 7 C 0.086 3.914 8 C 0.030 3.970 9 C -0.545 4.545 10 H 0.064 0.936 11 C -0.001 4.001 12 N -0.933 5.933 13 Si 0.970 3.030 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.262 1.262 17 N -0.391 5.391 18 O 0.089 5.911 19 H 0.092 0.908 20 H 0.105 0.895 21 H 0.111 0.889 22 H 0.195 0.805 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.342 0.658 26 H 0.059 0.941 27 H 0.033 0.967 28 H -0.006 1.006 29 H -0.011 1.011 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.398 -1.715 -11.910 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 C -0.261 4.261 4 C -0.150 4.150 5 C 0.008 3.992 6 N -0.331 5.331 7 C -0.043 4.043 8 C -0.007 4.007 9 C -0.584 4.584 10 H 0.082 0.918 11 C -0.198 4.198 12 N -0.573 5.573 13 Si 0.794 3.206 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.187 1.187 17 N -0.096 5.096 18 O 0.022 5.978 19 H 0.111 0.889 20 H 0.124 0.876 21 H 0.130 0.870 22 H 0.213 0.787 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.159 0.841 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.012 0.988 29 H 0.008 0.992 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.205 -3.377 -11.734 19.501 hybrid contribution 0.379 1.864 0.315 1.928 sum -14.826 -1.513 -11.419 18.775 Atomic orbital electron populations 1.20581 0.80494 1.05915 1.05764 1.25364 0.98141 0.85158 1.00732 1.22754 0.90153 1.02537 1.10639 1.23694 0.98028 0.90037 1.03195 1.20177 0.90173 0.97886 0.90914 1.60414 1.06386 1.56565 1.09691 1.21813 0.89660 0.94614 0.98186 1.18932 0.94979 0.94983 0.91820 1.21609 1.07611 1.35827 0.93325 0.91796 1.26019 1.01818 0.96842 0.95170 1.70121 1.41288 1.47478 0.98453 0.85371 0.78523 0.78679 0.78002 1.19474 1.20822 1.18658 1.73852 0.97730 1.17652 1.20356 1.84790 1.11194 1.34423 1.67381 0.88883 0.87613 0.87024 0.78742 0.90823 0.90333 0.84053 0.92238 0.94928 0.98787 0.99221 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.45 71.24 0.74 0.14 16 2 C -0.03 -0.60 7.49 25.04 0.19 -0.42 16 3 C -0.24 -5.29 11.06 22.40 0.25 -5.04 16 4 C 0.01 0.26 6.84 43.58 0.30 0.56 16 5 C 0.14 4.26 6.27 85.56 0.54 4.79 16 6 N -0.70 -26.61 6.49 -517.93 -3.36 -29.97 16 7 C 0.09 3.69 5.62 86.30 0.49 4.18 16 8 C 0.03 1.67 5.23 29.85 0.16 1.82 16 9 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 10 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 11 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 12 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 13 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 17 N -0.39 -13.04 12.07 -49.55 -0.60 -13.64 16 18 O 0.09 2.45 11.20 71.69 0.80 3.25 16 19 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 20 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 21 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 22 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16 23 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.34 12.52 8.72 -89.69 -0.78 11.74 16 26 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 28 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 30 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -71.43 267.54 2.85 -68.57 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.35 Total: 7.73 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 3.35 Total: -24.89 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -3.67 Total: -101.31 kcal Atomic # 8 Polarization: 2.45 SS G_CDS: 0.80 Total: 3.25 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -71.43 2.85 -68.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044724900.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.733 kcal (2) G-P(sol) polarization free energy of solvation -71.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds