Wall clock time and date at job start Sun Mar 29 2020 22:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29939 * 126.28707 * 2 1 4 4 O 1.21301 * 110.24820 * 179.72784 * 3 2 1 5 5 C 1.33635 * 109.81228 * 0.46466 * 4 3 2 6 6 C 1.50706 * 126.55435 * 179.80380 * 5 4 3 7 7 N 1.46505 * 109.47014 * 269.68885 * 6 5 4 8 8 C 1.34770 * 119.99664 * 179.97438 * 7 6 5 9 9 O 1.21686 * 120.00282 * 0.02562 * 8 7 6 10 10 C 1.46379 * 119.99780 * 179.97438 * 8 7 6 11 11 H 1.07998 * 120.00092 * 0.02562 * 10 8 7 12 12 C 1.40045 * 119.99985 * 180.02562 * 10 8 7 13 13 N 1.30669 * 120.00054 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 119.99991 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46744 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47088 * 119.99878 * 14 12 10 17 17 H 1.48493 * 109.47242 * 240.00235 * 14 12 10 18 18 N 1.31133 * 106.89680 * 359.54056 * 5 4 3 19 19 H 1.09001 * 109.46900 * 269.98097 * 1 2 3 20 20 H 1.08998 * 109.46698 * 29.97863 * 1 2 3 21 21 H 1.09004 * 109.47034 * 149.97757 * 1 2 3 22 22 H 1.09000 * 109.46646 * 29.68211 * 6 5 4 23 23 H 1.09000 * 109.47248 * 149.68929 * 6 5 4 24 24 H 0.97000 * 120.00105 * 359.97438 * 7 6 5 25 25 H 0.97008 * 120.00026 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0054 5 6 3.5299 -0.6212 -0.0007 6 6 4.7970 -1.4371 -0.0012 7 7 5.2071 -1.7012 -1.3827 8 6 6.3214 -2.4181 -1.6293 9 8 6.9865 -2.8464 -0.7047 10 6 6.7309 -2.6825 -3.0096 11 1 6.1404 -2.3027 -3.8302 12 6 7.8884 -3.4279 -3.2659 13 7 8.6032 -3.8870 -2.2731 14 14 8.4107 -3.7659 -5.0274 15 1 7.4391 -3.1407 -5.9603 16 1 9.7604 -3.1930 -5.2621 17 1 8.4479 -5.2320 -5.2600 18 7 2.3030 -1.0841 -0.0004 19 1 -0.3633 -0.0003 1.0277 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3633 -0.8898 -0.5142 22 1 5.5844 -0.8855 0.5124 23 1 4.6208 -2.3822 0.5125 24 1 4.6767 -1.3601 -2.1197 25 1 9.4048 -4.4036 -2.4507 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045008156.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:16 Heat of formation + Delta-G solvation = 26.373727 kcal Electronic energy + Delta-G solvation = -13232.519967 eV Core-core repulsion = 10635.570070 eV Total energy + Delta-G solvation = -2596.949896 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.47349 -37.52816 -35.98548 -34.26841 -32.60540 -31.87159 -29.24417 -27.66676 -25.55075 -23.41633 -21.40510 -19.93234 -18.02576 -17.75490 -16.98542 -15.48500 -15.01652 -14.29829 -14.20005 -13.82433 -13.66274 -13.35493 -12.68963 -12.33878 -12.23345 -11.56440 -11.40575 -11.18508 -11.02071 -10.92138 -10.56880 -10.26619 -9.90360 -8.93480 -7.79405 -7.78083 -6.28073 -4.73746 1.18645 2.27078 2.92339 3.10192 3.18859 3.23352 3.70856 4.05475 4.10370 4.48585 4.77417 5.00340 5.25117 5.31756 5.48944 5.62728 5.85614 5.91664 6.03755 6.13931 7.36320 7.66645 7.84468 8.20662 8.24611 8.93859 9.30891 10.46182 10.64927 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.063279 B = 0.006261 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.375859 B = 4471.208382 C = 4672.551936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.161 3.839 3 N -0.391 5.391 4 O 0.079 5.921 5 C 0.190 3.810 6 C 0.223 3.777 7 N -0.762 5.762 8 C 0.557 3.443 9 O -0.575 6.575 10 C -0.540 4.540 11 H 0.070 0.930 12 C 0.087 3.913 13 N -0.765 5.765 14 Si 0.911 3.089 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.275 1.275 18 N -0.476 5.476 19 H 0.086 0.914 20 H 0.084 0.916 21 H 0.091 0.909 22 H 0.090 0.910 23 H 0.099 0.901 24 H 0.385 0.615 25 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 5.812 1.640 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.112 4.112 3 N -0.101 5.101 4 O 0.021 5.979 5 C -0.031 4.031 6 C 0.096 3.904 7 N -0.421 5.421 8 C 0.362 3.638 9 O -0.458 6.458 10 C -0.577 4.577 11 H 0.089 0.911 12 C -0.133 4.133 13 N -0.393 5.393 14 Si 0.735 3.265 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.201 1.201 18 N -0.211 5.211 19 H 0.105 0.895 20 H 0.103 0.897 21 H 0.109 0.891 22 H 0.108 0.892 23 H 0.117 0.883 24 H 0.217 0.783 25 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.850 5.893 2.417 12.581 hybrid contribution 0.079 -0.001 -1.168 1.170 sum -10.771 5.892 1.249 12.340 Atomic orbital electron populations 1.20102 0.83099 1.04530 1.04073 1.25939 1.00583 0.83793 1.00847 1.74611 0.89584 1.24146 1.21727 1.85311 1.22101 1.25127 1.65334 1.29268 0.97306 0.81827 0.94704 1.19425 0.84936 0.96086 0.89920 1.46275 1.30755 1.61853 1.03237 1.18278 0.77675 0.76952 0.90850 1.90624 1.54200 1.54595 1.46338 1.20862 1.10251 1.35992 0.90565 0.91142 1.25716 0.95451 0.93745 0.98407 1.70017 1.12043 1.25367 1.31905 0.86259 0.78973 0.78577 0.82644 1.18736 1.20077 1.20076 1.71974 0.99808 1.29185 1.20119 0.89502 0.89689 0.89063 0.89231 0.88333 0.78330 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.51 36.01 0.38 -0.19 15 2 C 0.16 2.35 8.22 -156.38 -1.28 1.07 15 3 N -0.39 -6.20 12.16 30.89 0.38 -5.82 15 4 O 0.08 1.28 11.31 18.12 0.20 1.49 15 5 C 0.19 3.14 7.88 -13.05 -0.10 3.04 15 6 C 0.22 4.05 6.30 -5.19 -0.03 4.01 15 7 N -0.76 -16.42 5.54 -62.90 -0.35 -16.77 15 8 C 0.56 15.22 7.75 -12.99 -0.10 15.12 15 9 O -0.58 -17.77 15.02 5.20 0.08 -17.70 15 10 C -0.54 -14.79 9.54 -35.63 -0.34 -15.13 15 11 H 0.07 1.78 7.85 -52.49 -0.41 1.37 15 12 C 0.09 2.36 5.50 -17.37 -0.10 2.27 15 13 N -0.76 -22.26 11.83 55.55 0.66 -21.61 15 14 Si 0.91 19.65 29.56 -169.99 -5.02 14.63 15 15 H -0.26 -5.51 7.11 56.52 0.40 -5.10 15 16 H -0.28 -5.83 7.11 56.52 0.40 -5.42 15 17 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 18 N -0.48 -7.86 11.55 -9.87 -0.11 -7.98 15 19 H 0.09 0.69 8.14 -51.93 -0.42 0.26 15 20 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.09 0.79 8.14 -51.93 -0.42 0.36 15 22 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15 23 H 0.10 1.83 8.14 -51.93 -0.42 1.40 15 24 H 0.38 7.56 8.44 -40.82 -0.34 7.22 15 25 H 0.27 7.09 8.29 -40.82 -0.34 6.75 15 LS Contribution 239.27 15.07 3.61 3.61 Total: -1.00 -33.01 239.27 -4.15 -37.16 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -2.00 Total: 2.82 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -1.58 Total: 10.18 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.57 Total: -52.17 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.28 Total: -16.21 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -33.01 -4.15 -37.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045008156.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.529 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds