Wall clock time and date at job start Sun Mar 29 2020 22:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29939 * 126.28707 * 2 1 4 4 O 1.21301 * 110.24820 * 179.72784 * 3 2 1 5 5 C 1.33635 * 109.81228 * 0.46466 * 4 3 2 6 6 C 1.50706 * 126.55435 * 179.80380 * 5 4 3 7 7 N 1.46505 * 109.47014 * 269.68885 * 6 5 4 8 8 C 1.34770 * 119.99664 * 179.97438 * 7 6 5 9 9 O 1.21686 * 120.00282 * 0.02562 * 8 7 6 10 10 C 1.46379 * 119.99780 * 179.97438 * 8 7 6 11 11 H 1.07998 * 120.00092 * 0.02562 * 10 8 7 12 12 C 1.40045 * 119.99985 * 180.02562 * 10 8 7 13 13 N 1.30669 * 120.00054 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 119.99991 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46744 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47088 * 119.99878 * 14 12 10 17 17 H 1.48493 * 109.47242 * 240.00235 * 14 12 10 18 18 N 1.31133 * 106.89680 * 359.54056 * 5 4 3 19 19 H 1.09001 * 109.46900 * 269.98097 * 1 2 3 20 20 H 1.08998 * 109.46698 * 29.97863 * 1 2 3 21 21 H 1.09004 * 109.47034 * 149.97757 * 1 2 3 22 22 H 1.09000 * 109.46646 * 29.68211 * 6 5 4 23 23 H 1.09000 * 109.47248 * 149.68929 * 6 5 4 24 24 H 0.97000 * 120.00105 * 359.97438 * 7 6 5 25 25 H 0.97008 * 120.00026 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0054 5 6 3.5299 -0.6212 -0.0007 6 6 4.7970 -1.4371 -0.0012 7 7 5.2071 -1.7012 -1.3827 8 6 6.3214 -2.4181 -1.6293 9 8 6.9865 -2.8464 -0.7047 10 6 6.7309 -2.6825 -3.0096 11 1 6.1404 -2.3027 -3.8302 12 6 7.8884 -3.4279 -3.2659 13 7 8.6032 -3.8870 -2.2731 14 14 8.4107 -3.7659 -5.0274 15 1 7.4391 -3.1407 -5.9603 16 1 9.7604 -3.1930 -5.2621 17 1 8.4479 -5.2320 -5.2600 18 7 2.3030 -1.0841 -0.0004 19 1 -0.3633 -0.0003 1.0277 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3633 -0.8898 -0.5142 22 1 5.5844 -0.8855 0.5124 23 1 4.6208 -2.3822 0.5125 24 1 4.6767 -1.3601 -2.1197 25 1 9.4048 -4.4036 -2.4507 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045008156.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:15 Heat of formation + Delta-G solvation = -0.357864 kcal Electronic energy + Delta-G solvation = -13233.679136 eV Core-core repulsion = 10635.570070 eV Total energy + Delta-G solvation = -2598.109065 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -46.71443 -39.51509 -37.23018 -35.92853 -34.59241 -33.46075 -30.24212 -29.41610 -27.38855 -24.66971 -22.72454 -21.85392 -19.63043 -19.20685 -18.39170 -17.50012 -16.65016 -16.02641 -15.73813 -15.25564 -14.76274 -14.48813 -14.30574 -13.76138 -13.56819 -13.13747 -13.12940 -12.73678 -12.65631 -12.50571 -12.18587 -11.97097 -11.13489 -10.94285 -9.93864 -9.69073 -8.31198 -6.87444 -0.11602 1.06704 1.42598 1.43769 1.56485 1.61606 2.26242 2.44025 2.56185 2.98125 3.07337 3.58441 3.81225 4.30001 4.40364 4.53378 4.58485 4.69276 4.81731 5.07650 5.32873 5.80265 5.93948 6.19314 6.85978 6.99566 7.36610 8.40431 8.63670 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.063279 B = 0.006261 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.375859 B = 4471.208382 C = 4672.551936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.166 3.834 3 N -0.403 5.403 4 O 0.071 5.929 5 C 0.192 3.808 6 C 0.229 3.771 7 N -0.751 5.751 8 C 0.545 3.455 9 O -0.621 6.621 10 C -0.568 4.568 11 H 0.087 0.913 12 C 0.031 3.969 13 N -0.816 5.816 14 Si 0.998 3.002 15 H -0.249 1.249 16 H -0.268 1.268 17 H -0.268 1.268 18 N -0.488 5.488 19 H 0.108 0.892 20 H 0.102 0.898 21 H 0.102 0.898 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.395 0.605 25 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.188 6.236 0.338 13.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 N -0.114 5.114 4 O 0.017 5.983 5 C -0.029 4.029 6 C 0.103 3.897 7 N -0.409 5.409 8 C 0.351 3.649 9 O -0.507 6.507 10 C -0.605 4.605 11 H 0.106 0.894 12 C -0.185 4.185 13 N -0.446 5.446 14 Si 0.818 3.182 15 H -0.172 1.172 16 H -0.193 1.193 17 H -0.193 1.193 18 N -0.224 5.224 19 H 0.126 0.874 20 H 0.121 0.879 21 H 0.121 0.879 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.229 0.771 25 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.193 6.358 1.116 13.797 hybrid contribution 0.367 -0.083 -0.693 0.788 sum -11.826 6.275 0.423 13.394 Atomic orbital electron populations 1.20404 0.79610 1.05975 1.05869 1.26816 1.02395 0.82670 0.98790 1.74624 0.89440 1.24628 1.22746 1.85304 1.22682 1.24728 1.65613 1.28754 0.96774 0.82006 0.95407 1.19305 0.86044 0.96462 0.87894 1.45837 1.29415 1.60482 1.05168 1.18529 0.78525 0.77110 0.90770 1.90584 1.56069 1.56571 1.47490 1.21396 1.11205 1.36611 0.91255 0.89440 1.26925 0.95021 0.92794 1.03744 1.70159 1.12901 1.26374 1.35126 0.84959 0.78774 0.78640 0.75869 1.17243 1.19300 1.19338 1.72004 0.99958 1.30163 1.20301 0.87385 0.87917 0.87909 0.88681 0.88674 0.77109 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 10.51 71.24 0.75 -0.23 15 2 C 0.17 4.50 8.22 138.47 1.14 5.64 15 3 N -0.40 -12.15 12.16 -60.36 -0.73 -12.89 15 4 O 0.07 2.26 11.31 74.90 0.85 3.11 15 5 C 0.19 6.21 7.88 88.38 0.70 6.90 15 6 C 0.23 8.35 6.30 85.63 0.54 8.89 15 7 N -0.75 -32.46 5.54 -471.13 -2.61 -35.07 15 8 C 0.55 30.27 7.75 86.36 0.67 30.94 15 9 O -0.62 -39.47 15.02 -4.30 -0.06 -39.53 15 10 C -0.57 -31.16 9.54 24.83 0.24 -30.93 15 11 H 0.09 4.33 7.85 -2.91 -0.02 4.31 15 12 C 0.03 1.67 5.50 85.30 0.47 2.14 15 13 N -0.82 -48.32 11.83 21.83 0.26 -48.06 15 14 Si 1.00 39.79 29.56 68.60 2.03 41.82 15 15 H -0.25 -9.26 7.11 99.48 0.71 -8.55 15 16 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 17 H -0.27 -10.33 7.11 99.48 0.71 -9.62 15 18 N -0.49 -15.48 11.55 -303.23 -3.50 -18.98 15 19 H 0.11 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.10 1.32 8.14 -2.39 -0.02 1.30 15 21 H 0.10 1.45 8.14 -2.39 -0.02 1.43 15 22 H 0.10 3.38 8.14 -2.39 -0.02 3.36 15 23 H 0.10 3.57 8.14 -2.39 -0.02 3.55 15 24 H 0.40 15.35 8.44 -92.71 -0.78 14.57 15 25 H 0.28 14.76 8.29 -92.70 -0.77 13.99 15 Total: -1.00 -71.35 239.27 1.17 -70.19 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.45 Total: 16.05 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: 4.50 Total: 23.36 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -6.59 Total: -115.00 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: 0.78 Total: -36.42 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -71.35 1.17 -70.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045008156.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.831 kcal (2) G-P(sol) polarization free energy of solvation -71.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds