Wall clock time and date at job start Sun Mar 29 2020 21:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36976 * 120.00035 * 2 1 4 4 H 1.07993 * 120.00421 * 204.18757 * 3 2 1 5 5 C 1.38973 * 119.99751 * 23.90865 * 3 2 1 6 6 N 1.31417 * 120.00218 * 5.19330 * 5 3 2 7 7 Si 1.86800 * 119.99930 * 185.18832 * 5 3 2 8 8 H 1.48507 * 109.46753 * 90.00347 * 7 5 3 9 9 H 1.48490 * 109.47362 * 210.00033 * 7 5 3 10 10 H 1.48496 * 109.47086 * 330.00641 * 7 5 3 11 11 C 1.34770 * 120.00129 * 179.97438 * 2 1 3 12 12 O 1.21671 * 120.00317 * 185.10354 * 11 2 1 13 13 C 1.47110 * 120.00031 * 5.10846 * 11 2 1 14 14 C 1.44434 * 123.47132 * 326.79564 * 13 11 2 15 15 C 1.32766 * 113.08851 * 179.80860 * 14 13 11 16 16 S 1.75497 * 110.59247 * 0.44085 * 15 14 13 17 17 C 1.36097 * 123.46919 * 147.08869 * 13 11 2 18 18 H 1.08994 * 109.46772 * 24.11728 * 1 2 3 19 19 H 1.09002 * 109.46636 * 144.11820 * 1 2 3 20 20 H 1.09002 * 109.46765 * 264.11475 * 1 2 3 21 21 H 0.97000 * 120.00501 * 179.97438 * 6 5 3 22 22 H 1.07999 * 123.45971 * 0.02562 * 14 13 11 23 23 H 1.08006 * 124.70091 * 180.17710 * 15 14 13 24 24 H 1.07994 * 124.60262 * 0.02562 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1862 0.0000 4 1 3.1588 1.2274 -0.3832 5 6 1.5445 2.3381 0.4878 6 7 0.3549 2.2709 1.0423 7 14 2.4216 3.9821 0.3554 8 1 2.0596 4.6342 -0.9287 9 1 2.0126 4.8538 1.4858 10 1 3.8898 3.7650 0.4037 11 6 2.1389 -1.1671 0.0005 12 8 3.3520 -1.1692 0.0943 13 6 1.4078 -2.4387 -0.1123 14 6 0.0897 -2.6513 0.4386 15 6 -0.3779 -3.8733 0.2134 16 16 0.7930 -4.8271 -0.6806 17 6 1.9061 -3.5377 -0.7417 18 1 -0.3633 0.9379 -0.4199 19 1 -0.3633 -0.8327 -0.6024 20 1 -0.3633 -0.1054 1.0223 21 1 -0.0676 3.0748 1.3831 22 1 -0.4607 -1.8929 0.9755 23 1 -1.3431 -4.2321 0.5391 24 1 2.8756 -3.5865 -1.2150 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049168.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:41 Heat of formation + Delta-G solvation = 13.646669 kcal Electronic energy + Delta-G solvation = -11757.081540 eV Core-core repulsion = 9570.039877 eV Total energy + Delta-G solvation = -2187.041663 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.87294 -36.09112 -34.71551 -31.57815 -29.23117 -26.76690 -25.00838 -23.37922 -20.37010 -18.44652 -17.55194 -16.79555 -15.42588 -14.97310 -14.21221 -14.00684 -13.59904 -12.67352 -12.48861 -12.31574 -12.08293 -11.57437 -11.21065 -11.18018 -10.91088 -10.47779 -10.36655 -10.30202 -9.00685 -8.60673 -8.49393 -7.90573 -7.71507 -6.35288 -3.91788 1.35832 1.98772 2.32924 2.70484 3.17908 3.23260 3.30097 4.11680 4.23905 4.98249 5.10964 5.28329 5.61976 5.91166 5.94349 6.34761 6.40555 6.59789 6.76977 6.86364 7.25799 7.50877 8.11185 8.46738 9.14384 9.37194 9.96403 10.66679 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.070040 B = 0.008585 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.673539 B = 3260.578857 C = 3588.995654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.433 5.433 3 C -0.299 4.299 4 H 0.100 0.900 5 C 0.029 3.971 6 N -0.882 5.882 7 Si 0.932 3.068 8 H -0.277 1.277 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.495 3.505 12 O -0.589 6.589 13 C -0.119 4.119 14 C -0.109 4.109 15 C -0.240 4.240 16 S 0.124 5.876 17 C -0.206 4.206 18 H 0.086 0.914 19 H 0.032 0.968 20 H 0.050 0.950 21 H 0.269 0.731 22 H 0.158 0.842 23 H 0.162 0.838 24 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 -8.421 -2.402 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.150 5.150 3 C -0.428 4.428 4 H 0.117 0.883 5 C -0.174 4.174 6 N -0.522 5.522 7 Si 0.758 3.242 8 H -0.203 1.203 9 H -0.208 1.208 10 H -0.192 1.192 11 C 0.282 3.718 12 O -0.475 6.475 13 C -0.135 4.135 14 C -0.139 4.139 15 C -0.375 4.375 16 S 0.387 5.613 17 C -0.344 4.344 18 H 0.104 0.896 19 H 0.051 0.949 20 H 0.068 0.932 21 H 0.079 0.921 22 H 0.175 0.825 23 H 0.180 0.820 24 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.232 -9.707 -2.801 10.954 hybrid contribution 0.181 2.351 0.602 2.434 sum -4.050 -7.356 -2.199 8.681 Atomic orbital electron populations 1.21933 0.81136 1.00977 0.99894 1.43485 1.05750 1.04512 1.61244 1.19727 1.00282 0.84083 1.38682 0.88273 1.25419 0.96350 1.00254 0.95397 1.69984 1.14675 1.29665 1.37835 0.85832 0.79827 0.80723 0.77802 1.20278 1.20771 1.19249 1.17398 0.87064 0.82517 0.84813 1.90621 1.13693 1.86805 1.56425 1.20689 0.94826 0.96385 1.01638 1.21864 0.94607 0.96998 1.00457 1.25350 1.04442 0.98324 1.09336 1.82630 1.07852 1.15747 1.55071 1.25294 1.04979 0.97047 1.07092 0.89587 0.94949 0.93190 0.92093 0.82454 0.82049 0.81677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.38 7.15 59.85 0.43 2.81 14 2 N -0.43 -11.54 3.02 -123.53 -0.37 -11.91 14 3 C -0.30 -8.50 9.25 -14.98 -0.14 -8.64 14 4 H 0.10 2.92 7.47 -52.49 -0.39 2.53 14 5 C 0.03 0.76 5.20 -17.46 -0.09 0.67 14 6 N -0.88 -23.35 10.41 55.50 0.58 -22.77 14 7 Si 0.93 20.79 29.56 -169.99 -5.02 15.76 14 8 H -0.28 -6.01 7.11 56.52 0.40 -5.61 14 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 14 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 14 11 C 0.49 12.99 7.46 -12.66 -0.09 12.90 14 12 O -0.59 -17.42 16.69 5.21 0.09 -17.34 14 13 C -0.12 -2.50 5.42 -104.63 -0.57 -3.07 14 14 C -0.11 -1.94 8.01 -39.02 -0.31 -2.25 14 15 C -0.24 -3.47 11.12 28.86 0.32 -3.15 14 16 S 0.12 1.72 23.02 -107.50 -2.47 -0.75 14 17 C -0.21 -3.76 10.67 29.96 0.32 -3.44 14 18 H 0.09 2.08 6.40 -51.93 -0.33 1.75 14 19 H 0.03 0.65 5.65 -51.93 -0.29 0.35 14 20 H 0.05 1.13 6.84 -51.93 -0.36 0.78 14 21 H 0.27 6.70 8.31 -40.82 -0.34 6.36 14 22 H 0.16 2.74 5.40 -52.49 -0.28 2.45 14 23 H 0.16 1.80 8.06 -52.48 -0.42 1.37 14 24 H 0.17 2.93 8.06 -52.49 -0.42 2.51 14 LS Contribution 224.47 15.07 3.38 3.38 Total: -1.00 -31.12 224.47 -5.60 -36.72 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -1.64 Total: 1.07 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.14 Total: -4.17 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.21 Total: -34.68 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.09 Total: -17.34 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.47 Total: -0.75 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -31.12 -5.60 -36.72 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049168.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.365 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds