Wall clock time and date at job start Sun Mar 29 2020 21:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34471 * 126.17007 * 2 1 4 4 C 1.30257 * 108.70427 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.61818 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.46634 * 90.00742 * 5 4 3 7 7 C 1.46502 * 119.99905 * 269.99742 * 6 5 4 8 8 C 1.36935 * 120.00007 * 90.00145 * 6 5 4 9 9 H 1.07998 * 120.00038 * 22.34358 * 8 6 5 10 10 C 1.38807 * 120.00054 * 202.34230 * 8 6 5 11 11 N 1.31620 * 119.99987 * 11.34666 * 10 8 6 12 12 Si 1.86799 * 120.00299 * 191.34240 * 10 8 6 13 13 H 1.48500 * 109.46982 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47001 * 120.00102 * 12 10 8 15 15 H 1.48493 * 109.47397 * 240.00261 * 12 10 8 16 16 O 1.33960 * 108.75822 * 359.73940 * 4 3 2 17 17 C 1.34334 * 126.16442 * 180.02562 * 2 1 3 18 18 C 1.50704 * 126.44323 * 0.02562 * 17 2 1 19 19 H 1.09001 * 109.47078 * 269.99646 * 1 2 3 20 20 H 1.08997 * 109.47132 * 29.99837 * 1 2 3 21 21 H 1.09000 * 109.47217 * 150.00052 * 1 2 3 22 22 H 1.08992 * 109.47008 * 210.00333 * 5 4 3 23 23 H 1.09002 * 109.47524 * 330.01036 * 5 4 3 24 24 H 1.08999 * 109.47306 * 94.21746 * 7 6 5 25 25 H 1.09004 * 109.46907 * 214.21884 * 7 6 5 26 26 H 1.09000 * 109.47567 * 334.21481 * 7 6 5 27 27 H 0.97004 * 120.00309 * 179.97438 * 11 10 8 28 28 H 1.08996 * 109.47607 * 89.99628 * 18 17 2 29 29 H 1.08999 * 109.46819 * 209.99725 * 18 17 2 30 30 H 1.09001 * 109.47031 * 329.99709 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0855 0.0000 4 6 3.5431 0.6946 0.0006 5 6 4.7480 1.5998 0.0002 6 7 5.1381 1.8938 1.3814 7 6 4.5712 3.0553 2.0712 8 6 6.0328 1.0831 2.0275 9 1 6.7139 0.4686 1.4577 10 6 6.0643 1.0513 3.4149 11 7 5.1002 1.6190 4.1082 12 14 7.4746 0.2025 4.2980 13 1 8.4224 -0.3520 3.2983 14 1 8.1821 1.1843 5.1587 15 1 6.9410 -0.8988 5.1389 16 8 3.5733 -0.6446 0.0067 17 6 2.2997 -1.0845 -0.0005 18 6 1.8492 -2.5226 -0.0017 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3634 -0.8900 -0.5138 22 1 5.5731 1.1061 -0.5131 23 1 4.5041 2.5293 -0.5142 24 1 3.6981 2.7461 2.6458 25 1 5.3175 3.4785 2.7437 26 1 4.2763 3.8055 1.3375 27 1 5.1220 1.5965 5.0778 28 1 1.7409 -2.8687 -1.0296 29 1 2.5898 -3.1357 0.5120 30 1 0.8912 -2.6037 0.5118 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045059750.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:42 Heat of formation + Delta-G solvation = 36.259063 kcal Electronic energy + Delta-G solvation = -13982.719933 eV Core-core repulsion = 11587.457703 eV Total energy + Delta-G solvation = -2395.262231 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.44984 -35.73055 -34.39102 -32.64054 -31.20403 -28.81535 -27.59803 -25.89714 -24.12906 -21.70547 -20.70838 -19.69898 -16.84201 -15.99670 -15.85502 -14.86226 -14.03505 -13.76997 -13.58179 -13.24100 -12.87678 -12.72818 -12.69960 -12.09669 -11.76219 -11.64837 -11.19073 -10.95078 -10.74863 -10.45296 -10.16974 -10.05763 -9.95911 -9.68498 -8.66664 -7.81804 -6.97547 -5.83812 -3.32234 2.20466 3.31007 3.38882 3.41651 3.45394 3.53184 4.42880 4.81031 5.23136 5.32910 5.40275 5.53957 5.55821 5.62438 5.84256 5.87725 5.91889 6.05972 6.31272 6.36621 6.66869 6.77330 6.83321 7.13667 7.34270 7.70285 7.76785 8.25645 8.62874 9.10146 9.69488 10.17704 11.19894 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.035581 B = 0.009647 C = 0.008769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.739163 B = 2901.692544 C = 3192.371016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.021 4.021 3 N -0.502 5.502 4 C 0.205 3.795 5 C 0.228 3.772 6 N -0.577 5.577 7 C 0.161 3.839 8 C -0.266 4.266 9 H 0.076 0.924 10 C 0.007 3.993 11 N -0.899 5.899 12 Si 0.911 3.089 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.289 1.289 16 O -0.198 6.198 17 C -0.085 4.085 18 C -0.058 4.058 19 H 0.067 0.933 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.031 0.969 25 H 0.051 0.949 26 H 0.005 0.995 27 H 0.255 0.745 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.403 -4.244 -7.591 10.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.141 4.141 3 N -0.233 5.233 4 C -0.006 4.006 5 C 0.097 3.903 6 N -0.297 5.297 7 C 0.017 3.983 8 C -0.396 4.396 9 H 0.094 0.906 10 C -0.192 4.192 11 N -0.542 5.542 12 Si 0.740 3.260 13 H -0.200 1.200 14 H -0.213 1.213 15 H -0.216 1.216 16 O -0.085 6.085 17 C -0.139 4.139 18 C -0.115 4.115 19 H 0.086 0.914 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.093 0.907 23 H 0.104 0.896 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.539 -3.580 -7.362 9.883 hybrid contribution 0.661 -1.293 0.856 1.686 sum -4.877 -4.872 -6.505 9.478 Atomic orbital electron populations 1.19992 0.87676 1.02273 1.02156 1.21388 0.97322 0.88542 1.06800 1.70297 1.01020 1.30929 1.21012 1.29209 0.97156 0.78674 0.95544 1.19869 0.87631 0.93081 0.89704 1.44356 1.47480 1.27620 1.10224 1.20905 0.98259 0.85775 0.93332 1.19381 1.09430 1.21557 0.89229 0.90607 1.25169 0.97851 0.99305 0.96915 1.70116 1.31199 1.46986 1.05921 0.86091 0.81464 0.78850 0.79591 1.19986 1.21308 1.21593 1.84448 1.29206 1.25175 1.69627 1.22938 0.82138 0.97589 1.11201 1.20080 1.01345 0.87547 1.02538 0.91392 0.91182 0.91559 0.90750 0.89617 0.95031 0.93040 0.97607 0.93480 0.90847 0.90872 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.05 36.00 0.36 -0.57 16 2 C -0.02 -0.41 7.11 -82.81 -0.59 -1.00 16 3 N -0.50 -11.45 11.29 -7.36 -0.08 -11.54 16 4 C 0.20 4.72 7.93 -12.95 -0.10 4.62 16 5 C 0.23 4.97 6.33 -5.19 -0.03 4.94 16 6 N -0.58 -14.94 2.91 -182.50 -0.53 -15.47 16 7 C 0.16 4.13 9.01 59.85 0.54 4.67 16 8 C -0.27 -7.41 9.67 -15.06 -0.15 -7.55 16 9 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 10 C 0.01 0.20 5.13 -17.43 -0.09 0.12 16 11 N -0.90 -26.64 10.58 55.49 0.59 -26.05 16 12 Si 0.91 21.92 29.57 -169.99 -5.03 16.90 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 O -0.20 -4.50 10.77 5.39 0.06 -4.44 16 17 C -0.08 -1.64 7.39 -35.68 -0.26 -1.90 16 18 C -0.06 -0.78 10.04 36.01 0.36 -0.42 16 19 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 20 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.07 0.76 7.79 -51.93 -0.40 0.35 16 22 H 0.07 1.47 8.03 -51.93 -0.42 1.06 16 23 H 0.09 1.65 7.86 -51.93 -0.41 1.24 16 24 H 0.03 0.89 7.42 -51.93 -0.39 0.51 16 25 H 0.05 1.37 7.19 -51.93 -0.37 1.00 16 26 H 0.01 0.12 7.84 -51.93 -0.41 -0.29 16 27 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 0.93 7.79 -51.93 -0.40 0.52 16 LS Contribution 261.75 15.07 3.94 3.94 Total: -1.00 -32.85 261.75 -5.05 -37.90 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -4.04 Total: -4.13 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 0.04 Total: 2.89 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.03 Total: -53.07 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: 0.06 Total: -4.44 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.85 -5.05 -37.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045059750.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.155 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds