Wall clock time and date at job start Sun Mar 29 2020 21:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34471 * 126.17007 * 2 1 4 4 C 1.30257 * 108.70427 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.61818 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.46634 * 90.00742 * 5 4 3 7 7 C 1.46502 * 119.99905 * 269.99742 * 6 5 4 8 8 C 1.36935 * 120.00007 * 90.00145 * 6 5 4 9 9 H 1.07998 * 120.00038 * 22.34358 * 8 6 5 10 10 C 1.38807 * 120.00054 * 202.34230 * 8 6 5 11 11 N 1.31620 * 119.99987 * 11.34666 * 10 8 6 12 12 Si 1.86799 * 120.00299 * 191.34240 * 10 8 6 13 13 H 1.48500 * 109.46982 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47001 * 120.00102 * 12 10 8 15 15 H 1.48493 * 109.47397 * 240.00261 * 12 10 8 16 16 O 1.33960 * 108.75822 * 359.73940 * 4 3 2 17 17 C 1.34334 * 126.16442 * 180.02562 * 2 1 3 18 18 C 1.50704 * 126.44323 * 0.02562 * 17 2 1 19 19 H 1.09001 * 109.47078 * 269.99646 * 1 2 3 20 20 H 1.08997 * 109.47132 * 29.99837 * 1 2 3 21 21 H 1.09000 * 109.47217 * 150.00052 * 1 2 3 22 22 H 1.08992 * 109.47008 * 210.00333 * 5 4 3 23 23 H 1.09002 * 109.47524 * 330.01036 * 5 4 3 24 24 H 1.08999 * 109.47306 * 94.21746 * 7 6 5 25 25 H 1.09004 * 109.46907 * 214.21884 * 7 6 5 26 26 H 1.09000 * 109.47567 * 334.21481 * 7 6 5 27 27 H 0.97004 * 120.00309 * 179.97438 * 11 10 8 28 28 H 1.08996 * 109.47607 * 89.99628 * 18 17 2 29 29 H 1.08999 * 109.46819 * 209.99725 * 18 17 2 30 30 H 1.09001 * 109.47031 * 329.99709 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0855 0.0000 4 6 3.5431 0.6946 0.0006 5 6 4.7480 1.5998 0.0002 6 7 5.1381 1.8938 1.3814 7 6 4.5712 3.0553 2.0712 8 6 6.0328 1.0831 2.0275 9 1 6.7139 0.4686 1.4577 10 6 6.0643 1.0513 3.4149 11 7 5.1002 1.6190 4.1082 12 14 7.4746 0.2025 4.2980 13 1 8.4224 -0.3520 3.2983 14 1 8.1821 1.1843 5.1587 15 1 6.9410 -0.8988 5.1389 16 8 3.5733 -0.6446 0.0067 17 6 2.2997 -1.0845 -0.0005 18 6 1.8492 -2.5226 -0.0017 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3634 -0.8900 -0.5138 22 1 5.5731 1.1061 -0.5131 23 1 4.5041 2.5293 -0.5142 24 1 3.6981 2.7461 2.6458 25 1 5.3175 3.4785 2.7437 26 1 4.2763 3.8055 1.3375 27 1 5.1220 1.5965 5.0778 28 1 1.7409 -2.8687 -1.0296 29 1 2.5898 -3.1357 0.5120 30 1 0.8912 -2.6037 0.5118 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045059750.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:41 Heat of formation + Delta-G solvation = 12.658723 kcal Electronic energy + Delta-G solvation = -13983.743321 eV Core-core repulsion = 11587.457703 eV Total energy + Delta-G solvation = -2396.285618 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.07083 -37.67818 -35.97343 -34.26873 -33.05974 -30.07059 -29.30817 -27.97853 -25.67112 -23.56753 -22.40356 -21.30375 -18.89114 -17.67985 -17.49840 -16.78024 -15.67249 -15.49953 -15.31948 -14.88085 -14.22902 -14.11848 -13.76843 -13.65240 -13.24441 -13.13490 -12.88725 -12.86881 -12.61492 -12.36343 -12.11482 -11.94425 -11.73542 -11.32863 -10.77625 -9.35519 -9.02691 -7.94213 -5.46844 0.62799 1.43376 1.43909 1.55856 1.79697 2.01453 2.45202 3.18376 3.38791 3.64134 3.93369 4.04017 4.32692 4.49954 4.65753 4.68308 4.73219 4.77791 4.80461 4.88653 4.98934 5.22693 5.27913 5.34486 5.54415 5.59855 5.64829 6.18783 6.96369 7.03485 7.66611 8.11252 9.09084 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.035581 B = 0.009647 C = 0.008769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.739163 B = 2901.692544 C = 3192.371016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.047 4.047 3 N -0.521 5.521 4 C 0.177 3.823 5 C 0.229 3.771 6 N -0.595 5.595 7 C 0.179 3.821 8 C -0.275 4.275 9 H 0.081 0.919 10 C -0.050 4.050 11 N -0.936 5.936 12 Si 0.977 3.023 13 H -0.260 1.260 14 H -0.285 1.285 15 H -0.294 1.294 16 O -0.220 6.220 17 C -0.086 4.086 18 C -0.057 4.057 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.103 0.897 22 H 0.091 0.909 23 H 0.109 0.891 24 H -0.006 1.006 25 H 0.031 0.969 26 H 0.036 0.964 27 H 0.250 0.750 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 -5.664 -8.652 11.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.167 4.167 3 N -0.252 5.252 4 C -0.033 4.033 5 C 0.100 3.900 6 N -0.316 5.316 7 C 0.035 3.965 8 C -0.405 4.405 9 H 0.099 0.901 10 C -0.246 4.246 11 N -0.582 5.582 12 Si 0.804 3.196 13 H -0.184 1.184 14 H -0.211 1.211 15 H -0.221 1.221 16 O -0.107 6.107 17 C -0.139 4.139 18 C -0.114 4.114 19 H 0.090 0.910 20 H 0.091 0.909 21 H 0.122 0.878 22 H 0.109 0.891 23 H 0.127 0.873 24 H 0.012 0.988 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.122 0.878 29 H 0.092 0.908 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.035 -5.014 -8.468 11.544 hybrid contribution 0.705 -0.901 1.049 1.553 sum -5.330 -5.915 -7.418 10.882 Atomic orbital electron populations 1.20151 0.84175 1.04324 1.03010 1.22241 0.99624 0.87835 1.06975 1.70269 1.01472 1.32628 1.20810 1.29000 0.97488 0.79218 0.97635 1.19969 0.88009 0.94310 0.87738 1.44465 1.48020 1.27774 1.11347 1.20599 0.96012 0.86474 0.93459 1.19726 1.09951 1.21080 0.89696 0.90079 1.25991 1.00321 1.00518 0.97741 1.70295 1.33171 1.48994 1.05700 0.85063 0.78687 0.77477 0.78375 1.18407 1.21116 1.22130 1.84414 1.31263 1.25127 1.69930 1.24084 0.80774 1.00175 1.08908 1.20387 1.02345 0.83722 1.04917 0.90980 0.90913 0.87815 0.89075 0.87340 0.98770 0.95062 0.94511 0.94027 0.87779 0.90812 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.57 10.05 71.24 0.72 -0.86 16 2 C -0.05 -1.80 7.11 41.26 0.29 -1.51 16 3 N -0.52 -23.51 11.29 -291.99 -3.30 -26.81 16 4 C 0.18 8.09 7.93 88.34 0.70 8.79 16 5 C 0.23 9.86 6.33 85.63 0.54 10.41 16 6 N -0.59 -30.99 2.91 -731.30 -2.13 -33.12 16 7 C 0.18 9.33 9.01 127.77 1.15 10.48 16 8 C -0.27 -15.33 9.67 84.03 0.81 -14.52 16 9 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16 10 C -0.05 -2.86 5.13 84.86 0.44 -2.42 16 11 N -0.94 -56.93 10.58 21.65 0.23 -56.70 16 12 Si 0.98 45.39 29.57 68.60 2.03 47.42 16 13 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 16 O -0.22 -9.89 10.77 -3.62 -0.04 -9.93 16 17 C -0.09 -3.19 7.39 24.79 0.18 -3.00 16 18 C -0.06 -1.35 10.04 71.24 0.72 -0.63 16 19 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 20 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.10 1.92 7.79 -2.39 -0.02 1.90 16 22 H 0.09 3.54 8.03 -2.39 -0.02 3.52 16 23 H 0.11 4.06 7.86 -2.39 -0.02 4.04 16 24 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 25 H 0.03 1.70 7.19 -2.39 -0.02 1.68 16 26 H 0.04 1.63 7.84 -2.39 -0.02 1.61 16 27 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.11 1.99 7.79 -2.39 -0.02 1.97 16 Total: -1.00 -72.04 261.75 3.46 -68.57 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: 1.12 Total: 3.81 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 5.55 Total: 6.75 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -5.20 Total: -116.63 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.04 Total: -9.93 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -72.04 3.46 -68.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045059750.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.233 kcal (2) G-P(sol) polarization free energy of solvation -72.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds