Wall clock time and date at job start Sun Mar 29 2020 22:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47145 * 2 1 4 4 C 1.36945 * 120.00166 * 269.64328 * 3 2 1 5 5 H 1.07993 * 119.99655 * 322.04114 * 4 3 2 6 6 C 1.38810 * 119.99911 * 142.03519 * 4 3 2 7 7 N 1.31628 * 119.99668 * 157.05691 * 6 4 3 8 8 Si 1.86804 * 120.00443 * 337.06194 * 6 4 3 9 9 H 1.48504 * 109.47050 * 95.69397 * 8 6 4 10 10 H 1.48502 * 109.46813 * 215.69451 * 8 6 4 11 11 H 1.48499 * 109.47025 * 335.69350 * 8 6 4 12 12 C 1.46508 * 120.00444 * 89.63986 * 3 2 1 13 13 C 1.50698 * 109.46638 * 90.00105 * 12 3 2 14 14 C 1.38421 * 122.53981 * 90.00637 * 13 12 3 15 15 C 1.33390 * 114.92063 * 179.97438 * 14 13 12 16 16 S 1.75879 * 109.59463 * 0.02562 * 15 14 13 17 17 C 1.33390 * 122.53871 * 269.97680 * 13 12 3 18 18 H 1.09005 * 109.47155 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.47774 * 300.00052 * 1 2 3 20 20 H 1.09004 * 109.47097 * 60.00380 * 1 2 3 21 21 H 1.08998 * 109.47309 * 239.99688 * 2 1 3 22 22 H 1.09004 * 109.47097 * 119.99620 * 2 1 3 23 23 H 0.96998 * 119.99769 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.46754 * 330.00437 * 12 3 2 25 25 H 1.08995 * 109.47355 * 210.00022 * 12 3 2 26 26 H 1.08003 * 122.53779 * 359.70365 * 14 13 12 27 27 H 1.08008 * 125.20079 * 179.97438 * 15 14 13 28 28 H 1.07994 * 125.20739 * 0.06386 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2535 2.0243 -1.1859 5 1 2.6779 1.4832 -2.0186 6 6 1.9463 3.3715 -1.3177 7 7 2.5514 4.0980 -2.2335 8 14 0.6743 4.1537 -0.1953 9 1 1.3585 4.8010 0.9529 10 1 -0.0938 5.1740 -0.9531 11 1 -0.2529 3.1079 0.3065 12 6 2.2550 2.0745 1.2687 13 6 3.6757 1.8386 1.7125 14 6 4.7178 2.6737 1.3484 15 6 5.9126 2.3228 1.8266 16 16 5.7550 0.8625 2.7941 17 6 4.0241 0.8096 2.4865 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8901 23 1 2.3365 5.0393 -2.3258 24 1 1.5697 1.6920 2.0251 25 1 2.0888 3.1434 1.1351 26 1 4.5752 3.5410 0.7208 27 1 6.8358 2.8538 1.6465 28 1 3.3471 0.0583 2.8654 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045061590.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:22 Heat of formation + Delta-G solvation = 55.404455 kcal Electronic energy + Delta-G solvation = -12168.503230 eV Core-core repulsion = 10119.105415 eV Total energy + Delta-G solvation = -2049.397815 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.94815 -35.43588 -31.92632 -30.25763 -28.76787 -25.98540 -23.90363 -22.33731 -20.20461 -18.32606 -17.22482 -16.54596 -15.08854 -14.72644 -14.37380 -13.32163 -13.05307 -12.50365 -12.47986 -12.35799 -11.81248 -11.70185 -11.45042 -11.31719 -10.82818 -10.57929 -10.31915 -10.00889 -9.90742 -9.59916 -8.53300 -8.21102 -7.80271 -6.86473 -6.02020 -3.41776 1.59485 2.23336 2.51994 3.27862 3.40255 3.47311 3.50943 4.50526 5.13318 5.31349 5.47300 5.68614 5.91929 5.99181 6.11566 6.23529 6.28663 6.34472 6.49981 6.55382 6.72678 6.80967 7.04239 7.06005 7.24368 8.03502 8.38266 8.96293 9.68913 10.10331 11.13426 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.012628 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.262895 B = 2216.739049 C = 2686.454332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.146 3.854 3 N -0.595 5.595 4 C -0.264 4.264 5 H 0.077 0.923 6 C 0.038 3.962 7 N -0.897 5.897 8 Si 0.869 3.131 9 H -0.285 1.285 10 H -0.301 1.301 11 H -0.265 1.265 12 C 0.186 3.814 13 C -0.090 4.090 14 C -0.098 4.098 15 C -0.219 4.219 16 S 0.031 5.969 17 C -0.215 4.215 18 H 0.039 0.961 19 H 0.041 0.959 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.037 0.963 23 H 0.263 0.737 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.142 0.858 27 H 0.156 0.844 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 -5.039 9.249 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.020 3.980 3 N -0.317 5.317 4 C -0.393 4.393 5 H 0.095 0.905 6 C -0.162 4.162 7 N -0.538 5.538 8 Si 0.698 3.302 9 H -0.213 1.213 10 H -0.229 1.229 11 H -0.190 1.190 12 C 0.058 3.942 13 C -0.105 4.105 14 C -0.129 4.129 15 C -0.354 4.354 16 S 0.292 5.708 17 C -0.351 4.351 18 H 0.058 0.942 19 H 0.060 0.940 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.160 0.840 27 H 0.174 0.826 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.036 -5.793 9.941 11.899 hybrid contribution -1.597 1.454 -0.340 2.186 sum 1.439 -4.339 9.601 10.633 Atomic orbital electron populations 1.22333 0.99563 0.99222 1.01685 1.20853 0.91695 0.86374 0.99066 1.44142 1.74585 1.11450 1.01495 1.18768 1.36404 0.93381 0.90701 0.90496 1.25446 0.97635 0.96759 0.96384 1.69894 1.40734 1.06947 1.36200 0.87050 0.84073 0.78931 0.80105 1.21267 1.22862 1.18978 1.20026 0.88398 0.97632 0.88115 1.20006 1.00131 0.94524 0.95842 1.20271 0.91311 1.01510 0.99773 1.25410 1.01867 1.01274 1.06844 1.83800 1.06548 1.27092 1.53393 1.25248 0.96619 1.04551 1.08640 0.94231 0.94025 0.92483 0.93051 0.94481 0.92715 0.93295 0.91928 0.84017 0.82615 0.82857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 10.24 37.16 0.38 -2.70 15 2 C 0.15 2.90 6.39 -4.05 -0.03 2.87 15 3 N -0.60 -13.97 2.05 -174.61 -0.36 -14.33 15 4 C -0.26 -7.25 9.90 -15.06 -0.15 -7.40 15 5 H 0.08 2.31 8.06 -52.49 -0.42 1.89 15 6 C 0.04 1.08 5.29 -17.43 -0.09 0.99 15 7 N -0.90 -26.80 13.97 55.49 0.78 -26.03 15 8 Si 0.87 21.69 25.10 -169.99 -4.27 17.43 15 9 H -0.28 -6.91 6.68 56.52 0.38 -6.54 15 10 H -0.30 -7.66 7.11 56.52 0.40 -7.26 15 11 H -0.27 -6.47 7.11 56.52 0.40 -6.06 15 12 C 0.19 4.05 4.76 -5.19 -0.02 4.03 15 13 C -0.09 -1.81 5.38 -106.25 -0.57 -2.39 15 14 C -0.10 -1.97 9.98 -41.21 -0.41 -2.38 15 15 C -0.22 -3.76 11.23 29.04 0.33 -3.43 15 16 S 0.03 0.48 23.34 -107.50 -2.51 -2.03 15 17 C -0.21 -3.74 10.98 29.04 0.32 -3.42 15 18 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 19 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 21 H 0.05 1.03 8.04 -51.93 -0.42 0.62 15 22 H 0.04 0.66 8.08 -51.93 -0.42 0.24 15 23 H 0.26 7.46 8.31 -40.82 -0.34 7.13 15 24 H 0.05 0.95 8.05 -51.93 -0.42 0.53 15 25 H 0.06 1.48 3.36 -51.93 -0.17 1.30 15 26 H 0.14 3.07 8.06 -52.48 -0.42 2.65 15 27 H 0.16 2.26 8.06 -52.48 -0.42 1.84 15 28 H 0.15 2.34 8.06 -52.49 -0.42 1.92 15 LS Contribution 251.99 15.07 3.80 3.80 Total: -1.00 -29.15 251.99 -6.36 -35.51 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.55 Total: -0.53 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -0.25 Total: -13.82 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.42 Total: -40.35 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.27 Total: 17.43 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -2.51 Total: -2.03 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.15 -6.36 -35.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061590.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.912 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds