Wall clock time and date at job start Sun Mar 29 2020 22:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47145 * 2 1 4 4 C 1.36945 * 120.00166 * 269.64328 * 3 2 1 5 5 H 1.07993 * 119.99655 * 322.04114 * 4 3 2 6 6 C 1.38810 * 119.99911 * 142.03519 * 4 3 2 7 7 N 1.31628 * 119.99668 * 157.05691 * 6 4 3 8 8 Si 1.86804 * 120.00443 * 337.06194 * 6 4 3 9 9 H 1.48504 * 109.47050 * 95.69397 * 8 6 4 10 10 H 1.48502 * 109.46813 * 215.69451 * 8 6 4 11 11 H 1.48499 * 109.47025 * 335.69350 * 8 6 4 12 12 C 1.46508 * 120.00444 * 89.63986 * 3 2 1 13 13 C 1.50698 * 109.46638 * 90.00105 * 12 3 2 14 14 C 1.38421 * 122.53981 * 90.00637 * 13 12 3 15 15 C 1.33390 * 114.92063 * 179.97438 * 14 13 12 16 16 S 1.75879 * 109.59463 * 0.02562 * 15 14 13 17 17 C 1.33390 * 122.53871 * 269.97680 * 13 12 3 18 18 H 1.09005 * 109.47155 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.47774 * 300.00052 * 1 2 3 20 20 H 1.09004 * 109.47097 * 60.00380 * 1 2 3 21 21 H 1.08998 * 109.47309 * 239.99688 * 2 1 3 22 22 H 1.09004 * 109.47097 * 119.99620 * 2 1 3 23 23 H 0.96998 * 119.99769 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.46754 * 330.00437 * 12 3 2 25 25 H 1.08995 * 109.47355 * 210.00022 * 12 3 2 26 26 H 1.08003 * 122.53779 * 359.70365 * 14 13 12 27 27 H 1.08008 * 125.20079 * 179.97438 * 15 14 13 28 28 H 1.07994 * 125.20739 * 0.06386 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2535 2.0243 -1.1859 5 1 2.6779 1.4832 -2.0186 6 6 1.9463 3.3715 -1.3177 7 7 2.5514 4.0980 -2.2335 8 14 0.6743 4.1537 -0.1953 9 1 1.3585 4.8010 0.9529 10 1 -0.0938 5.1740 -0.9531 11 1 -0.2529 3.1079 0.3065 12 6 2.2550 2.0745 1.2687 13 6 3.6757 1.8386 1.7125 14 6 4.7178 2.6737 1.3484 15 6 5.9126 2.3228 1.8266 16 16 5.7550 0.8625 2.7941 17 6 4.0241 0.8096 2.4865 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8901 23 1 2.3365 5.0393 -2.3258 24 1 1.5697 1.6920 2.0251 25 1 2.0888 3.1434 1.1351 26 1 4.5752 3.5410 0.7208 27 1 6.8358 2.8538 1.6465 28 1 3.3471 0.0583 2.8654 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045061590.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:22 Heat of formation + Delta-G solvation = 38.119476 kcal Electronic energy + Delta-G solvation = -12169.252763 eV Core-core repulsion = 10119.105415 eV Total energy + Delta-G solvation = -2050.147348 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.48876 -37.12492 -33.97388 -31.81026 -30.36947 -27.67728 -25.72764 -23.80119 -21.94458 -19.89970 -18.85732 -18.20955 -17.02420 -16.31417 -15.98515 -15.10869 -14.84679 -14.26962 -14.00228 -13.77582 -13.45046 -13.26185 -13.01990 -12.91556 -12.63628 -12.29050 -11.94724 -11.71999 -11.58202 -11.48669 -10.62243 -9.60310 -9.14132 -8.76824 -8.19171 -5.55450 0.19979 0.90600 1.13716 1.29689 1.40408 1.51727 1.89830 2.42578 3.10599 3.51288 4.08299 4.29143 4.40593 4.48125 4.64903 4.68050 4.83112 4.83741 4.91102 5.06610 5.24491 5.26980 5.54627 5.56009 5.77010 5.96688 6.19707 7.00464 7.64620 8.07396 9.00710 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.012628 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.262895 B = 2216.739049 C = 2686.454332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 N -0.607 5.607 4 C -0.250 4.250 5 H 0.035 0.965 6 C -0.013 4.013 7 N -0.946 5.946 8 Si 0.931 3.069 9 H -0.277 1.277 10 H -0.310 1.310 11 H -0.251 1.251 12 C 0.185 3.815 13 C -0.120 4.120 14 C -0.135 4.135 15 C -0.219 4.219 16 S 0.107 5.893 17 C -0.210 4.210 18 H 0.074 0.926 19 H 0.045 0.955 20 H 0.030 0.970 21 H 0.040 0.960 22 H 0.067 0.933 23 H 0.262 0.738 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.109 0.891 27 H 0.178 0.822 28 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.964 -6.811 11.938 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.016 3.984 3 N -0.329 5.329 4 C -0.380 4.380 5 H 0.053 0.947 6 C -0.209 4.209 7 N -0.590 5.590 8 Si 0.760 3.240 9 H -0.204 1.204 10 H -0.239 1.239 11 H -0.175 1.175 12 C 0.058 3.942 13 C -0.135 4.135 14 C -0.166 4.166 15 C -0.354 4.354 16 S 0.369 5.631 17 C -0.346 4.346 18 H 0.093 0.907 19 H 0.064 0.936 20 H 0.049 0.951 21 H 0.059 0.941 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.127 0.873 27 H 0.196 0.804 28 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.979 -7.602 12.670 15.073 hybrid contribution -1.419 1.864 -1.117 2.595 sum 1.560 -5.738 11.554 12.994 Atomic orbital electron populations 1.22222 0.97991 1.01216 1.00527 1.21018 0.92915 0.84469 1.00004 1.44250 1.75374 1.12548 1.00774 1.18574 1.34771 0.93262 0.91411 0.94685 1.25971 0.99331 0.97398 0.98216 1.70015 1.42755 1.07229 1.39032 0.86032 0.81504 0.78067 0.78382 1.20437 1.23865 1.17468 1.19993 0.90364 0.96156 0.87734 1.19805 0.99113 0.96248 0.98318 1.20158 0.93085 1.01781 1.01611 1.25759 1.01695 1.02139 1.05803 1.83574 1.04063 1.24471 1.50998 1.25584 0.98667 1.03571 1.06748 0.90681 0.93635 0.95083 0.94135 0.91473 0.92944 0.90558 0.94380 0.87312 0.80433 0.80209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.43 10.24 71.98 0.74 -4.70 15 2 C 0.14 5.31 6.39 86.38 0.55 5.86 15 3 N -0.61 -28.15 2.05 -706.35 -1.45 -29.60 15 4 C -0.25 -14.18 9.90 84.03 0.83 -13.34 15 5 H 0.04 2.24 8.06 -2.91 -0.02 2.22 15 6 C -0.01 -0.73 5.29 84.86 0.45 -0.28 15 7 N -0.95 -59.16 13.97 21.65 0.30 -58.85 15 8 Si 0.93 45.93 25.10 68.60 1.72 47.65 15 9 H -0.28 -13.16 6.68 99.48 0.66 -12.50 15 10 H -0.31 -15.58 7.11 99.48 0.71 -14.87 15 11 H -0.25 -11.63 7.11 99.48 0.71 -10.93 15 12 C 0.18 7.78 4.76 85.63 0.41 8.19 15 13 C -0.12 -4.66 5.38 -20.92 -0.11 -4.78 15 14 C -0.14 -5.45 9.98 21.22 0.21 -5.24 15 15 C -0.22 -7.10 11.23 66.72 0.75 -6.35 15 16 S 0.11 2.92 23.34 -56.49 -1.32 1.60 15 17 C -0.21 -6.54 10.98 66.72 0.73 -5.80 15 18 H 0.07 2.00 8.14 -2.38 -0.02 1.98 15 19 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 20 H 0.03 1.19 8.14 -2.38 -0.02 1.17 15 21 H 0.04 1.60 8.04 -2.39 -0.02 1.58 15 22 H 0.07 2.13 8.08 -2.38 -0.02 2.11 15 23 H 0.26 15.54 8.31 -92.71 -0.77 14.77 15 24 H 0.08 2.74 8.05 -2.39 -0.02 2.72 15 25 H 0.04 1.78 3.36 -2.39 -0.01 1.78 15 26 H 0.11 5.00 8.06 -2.91 -0.02 4.97 15 27 H 0.18 4.79 8.06 -2.91 -0.02 4.76 15 28 H 0.18 4.56 8.06 -2.91 -0.02 4.54 15 Total: -1.00 -64.77 251.99 4.90 -59.87 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.09 Total: 5.78 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 4.56 Total: -26.44 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -1.15 Total: -88.46 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.72 Total: 47.65 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.32 Total: 1.60 kcal Total: -64.77 4.90 -59.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061590.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.985 kcal (2) G-P(sol) polarization free energy of solvation -64.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds