Wall clock time and date at job start Sun Mar 29 2020 21:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00171 * 2 1 4 4 H 1.48499 * 109.47447 * 239.99951 * 3 2 1 5 5 H 1.48498 * 109.47056 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47186 * 120.00198 * 3 2 1 7 7 C 1.37879 * 119.99492 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99575 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00316 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.34770 * 119.99738 * 180.02562 * 10 9 7 12 12 O 1.21634 * 120.00291 * 359.97438 * 11 10 9 13 13 C 1.47191 * 119.99817 * 180.02562 * 11 10 9 14 14 C 1.44425 * 123.46449 * 180.02562 * 13 11 10 15 15 C 1.32766 * 113.08895 * 179.97438 * 14 13 11 16 16 S 1.75505 * 110.57315 * 359.74176 * 15 14 13 17 17 C 1.36014 * 123.46276 * 0.02562 * 13 11 10 18 18 H 0.96998 * 119.99403 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.46996 * 60.00228 * 9 7 2 20 20 H 1.08998 * 109.47147 * 300.00015 * 9 7 2 21 21 H 0.97004 * 119.99641 * 0.02562 * 10 9 7 22 22 H 1.08006 * 123.45781 * 0.02562 * 14 13 11 23 23 H 1.08001 * 124.71648 * 179.97438 * 15 14 13 24 24 H 1.08002 * 124.58647 * 359.97438 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7536 -4.8833 -0.0011 12 8 0.5577 -5.1056 -0.0011 13 6 2.7101 -6.0021 -0.0005 14 6 2.3118 -7.3904 -0.0015 15 6 3.3421 -8.2277 -0.0013 16 16 4.8570 -7.3414 -0.0072 17 6 4.0599 -5.8349 0.0011 18 1 -0.4849 0.8401 0.0004 19 1 0.6239 -2.5567 -0.8904 20 1 0.6246 -2.5571 0.8897 21 1 3.1566 -3.4355 -0.0002 22 1 1.2814 -7.7143 -0.0032 23 1 3.2596 -9.3045 -0.0016 24 1 4.5589 -4.8771 0.0016 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048521440.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:41 Heat of formation + Delta-G solvation = -37.825267 kcal Electronic energy + Delta-G solvation = -11161.951502 eV Core-core repulsion = 8972.677848 eV Total energy + Delta-G solvation = -2189.273654 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.75789 -37.75598 -36.21336 -34.42217 -31.12224 -29.09501 -26.11408 -24.52414 -22.17938 -20.44148 -19.22328 -18.39895 -17.64757 -16.90854 -16.21494 -16.05682 -15.28005 -14.32256 -14.27574 -14.04359 -13.84968 -13.54611 -13.37842 -12.93897 -12.68709 -12.26865 -12.04719 -11.54362 -10.90748 -10.81865 -10.06619 -9.89331 -9.27772 -8.30769 -6.48419 -0.18962 0.66103 0.96675 1.04572 1.42617 1.47276 1.55594 2.30421 2.39449 2.55836 3.03868 3.88327 4.08226 4.36354 4.46255 4.86924 5.04391 5.16261 5.18842 5.31669 5.42362 5.64570 5.80563 6.60553 6.82640 7.19538 7.38561 8.81420 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.059046 B = 0.006537 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.095412 B = 4282.377987 C = 4741.327711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.559 4.559 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.700 5.700 11 C 0.554 3.446 12 O -0.604 6.604 13 C -0.182 4.182 14 C -0.116 4.116 15 C -0.227 4.227 16 S 0.259 5.741 17 C -0.213 4.213 18 H 0.270 0.730 19 H -0.011 1.011 20 H -0.011 1.011 21 H 0.407 0.593 22 H 0.140 0.860 23 H 0.202 0.798 24 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.959 -13.320 -0.016 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.597 4.597 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.349 5.349 11 C 0.341 3.659 12 O -0.488 6.488 13 C -0.201 4.201 14 C -0.144 4.144 15 C -0.362 4.362 16 S 0.525 5.475 17 C -0.352 4.352 18 H 0.079 0.921 19 H 0.007 0.993 20 H 0.007 0.993 21 H 0.243 0.757 22 H 0.158 0.842 23 H 0.219 0.781 24 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 14.479 -13.774 -0.025 19.984 hybrid contribution -1.647 1.588 0.010 2.288 sum 12.832 -12.186 -0.015 17.696 Atomic orbital electron populations 1.70140 1.08331 1.28749 1.49636 1.26120 0.95842 1.04043 0.93691 0.85148 0.77870 0.76290 0.79542 1.18566 1.20979 1.18575 1.21561 0.94314 0.90400 1.53405 0.89721 1.18606 0.88659 0.84114 0.94278 1.46071 1.11232 1.05252 1.72327 1.18426 0.87908 0.83538 0.76045 1.90697 1.18739 1.85686 1.53659 1.20305 0.92965 0.94038 1.12752 1.21136 1.01242 0.89880 1.02164 1.25876 0.95424 1.05231 1.09632 1.82611 1.06431 0.91186 1.67312 1.26027 0.97106 1.07232 1.04790 0.92147 0.99271 0.99284 0.75715 0.84221 0.78124 0.79734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.53 14 2 C 0.00 0.16 5.46 84.65 0.46 0.62 14 3 Si 0.99 42.47 29.54 68.60 2.03 44.49 14 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 14 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 14 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 14 7 C -0.56 -30.99 9.28 25.60 0.24 -30.75 14 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 14 9 C 0.27 15.19 5.43 85.63 0.46 15.65 14 10 N -0.70 -31.87 5.52 -470.33 -2.59 -34.47 14 11 C 0.55 25.01 7.79 86.60 0.67 25.69 14 12 O -0.60 -32.89 16.80 -4.14 -0.07 -32.96 14 13 C -0.18 -6.07 5.98 -19.87 -0.12 -6.19 14 14 C -0.12 -3.28 10.10 22.67 0.23 -3.05 14 15 C -0.23 -4.32 11.12 66.64 0.74 -3.58 14 16 S 0.26 4.24 23.02 -56.49 -1.30 2.94 14 17 C -0.21 -5.18 10.38 67.30 0.70 -4.49 14 18 H 0.27 15.35 8.31 -92.71 -0.77 14.58 14 19 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 14 20 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 14 21 H 0.41 15.20 6.82 -92.71 -0.63 14.56 14 22 H 0.14 4.17 8.06 -2.91 -0.02 4.15 14 23 H 0.20 2.34 8.06 -2.91 -0.02 2.32 14 24 H 0.19 3.79 7.01 -2.91 -0.02 3.77 14 Total: -1.00 -73.93 237.15 2.32 -71.60 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.59 Total: 11.01 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 3.39 Total: -6.10 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -2.31 Total: -90.99 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.07 Total: -32.96 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.30 Total: 2.94 kcal Total: -73.93 2.32 -71.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048521440.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.779 kcal (2) G-P(sol) polarization free energy of solvation -73.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds