Wall clock time and date at job start Sun Mar 29 2020 21:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33380 * 125.20446 * 2 1 4 4 C 1.38424 * 114.91979 * 179.85799 * 3 2 1 5 5 C 1.33387 * 114.92317 * 0.43559 * 4 3 2 6 6 C 1.50700 * 125.20870 * 179.79200 * 5 4 3 7 7 H 1.09002 * 109.46909 * 339.99708 * 6 5 4 8 8 C 1.52993 * 109.47402 * 99.99732 * 6 5 4 9 9 N 1.46503 * 109.47148 * 220.00212 * 6 5 4 10 10 C 1.36934 * 119.99742 * 154.99997 * 9 6 5 11 11 H 1.07991 * 120.00740 * 359.97438 * 10 9 6 12 12 C 1.38817 * 119.99491 * 179.97438 * 10 9 6 13 13 N 1.31618 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00046 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46912 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47330 * 119.99795 * 14 12 10 17 17 H 1.48495 * 109.47564 * 240.00543 * 14 12 10 18 18 S 1.75886 * 109.59281 * 359.76596 * 5 4 3 19 19 H 1.08995 * 109.47411 * 179.71626 * 1 2 3 20 20 H 1.08998 * 109.46596 * 299.71565 * 1 2 3 21 21 H 1.09004 * 109.46950 * 59.71385 * 1 2 3 22 22 H 1.08001 * 122.54115 * 0.02562 * 3 2 1 23 23 H 1.08004 * 122.54250 * 180.19862 * 4 3 2 24 24 H 1.09002 * 109.47509 * 180.02562 * 8 6 5 25 25 H 1.09004 * 109.47317 * 299.99938 * 8 6 5 26 26 H 1.09002 * 109.47108 * 60.00098 * 8 6 5 27 27 H 0.96993 * 119.99626 * 334.99188 * 9 6 5 28 28 H 0.96995 * 119.99959 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8427 0.0031 5 6 3.9751 -0.4478 -0.0036 6 6 5.3860 -0.9773 -0.0065 7 1 6.0654 -0.1990 -0.3541 8 6 5.7758 -1.3982 1.4119 9 7 5.4714 -2.1349 -0.9003 10 6 6.6696 -2.4725 -1.4707 11 1 7.5516 -1.8853 -1.2621 12 6 6.7505 -3.5697 -2.3173 13 7 5.6758 -4.2858 -2.5712 14 14 8.3849 -4.0300 -3.0961 15 1 9.4311 -3.0736 -2.6531 16 1 8.7625 -5.4042 -2.6788 17 1 8.2606 -3.9782 -4.5749 18 16 2.5209 -1.4373 -0.0077 19 1 -0.3634 -1.0276 -0.0051 20 1 -0.3632 0.5094 0.8925 21 1 -0.3633 0.5183 -0.8874 22 1 1.8670 2.0894 0.0004 23 1 4.3722 1.6348 0.0066 24 1 6.7965 -1.7808 1.4099 25 1 5.7123 -0.5369 2.0769 26 1 5.0964 -2.1765 1.7595 27 1 4.6792 -2.6622 -1.0879 28 1 5.7323 -5.0522 -3.1630 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049183516.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:14 Heat of formation + Delta-G solvation = 32.112794 kcal Electronic energy + Delta-G solvation = -11603.024841 eV Core-core repulsion = 9552.617024 eV Total energy + Delta-G solvation = -2050.407817 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.77719 -35.41328 -32.41083 -30.83550 -28.45807 -26.05199 -23.94764 -22.56111 -20.70573 -18.73485 -16.95138 -16.33971 -14.93901 -14.50779 -13.77995 -13.55060 -13.42301 -12.88481 -12.78524 -12.26539 -11.94493 -11.70485 -11.40264 -11.16534 -10.85538 -10.74531 -10.55503 -10.17718 -9.97780 -9.70651 -8.98551 -7.98608 -7.97140 -7.01760 -5.78238 -3.08347 1.46367 2.08341 2.53271 3.15721 3.43028 3.48335 3.50703 4.57873 5.12985 5.33861 5.42070 5.53732 5.61564 5.76028 5.80457 5.95656 6.06504 6.17062 6.26611 6.46397 6.57184 6.72032 6.73846 6.94869 7.05293 7.68677 8.38860 9.50397 10.04453 10.40220 11.44275 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.049860 B = 0.008057 C = 0.007485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.435527 B = 3474.517131 C = 3740.124546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.211 4.211 3 C -0.137 4.137 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.234 3.766 7 H 0.065 0.935 8 C -0.160 4.160 9 N -0.722 5.722 10 C -0.242 4.242 11 H 0.074 0.926 12 C -0.011 4.011 13 N -0.930 5.930 14 Si 0.908 3.092 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.291 1.291 18 S 0.122 5.878 19 H 0.063 0.937 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.130 0.870 23 H 0.133 0.867 24 H 0.060 0.940 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.385 0.615 28 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.537 8.700 6.333 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.328 4.328 3 C -0.168 4.168 4 C -0.189 4.189 5 C -0.266 4.266 6 C 0.122 3.878 7 H 0.082 0.918 8 C -0.221 4.221 9 N -0.364 5.364 10 C -0.373 4.373 11 H 0.092 0.908 12 C -0.208 4.208 13 N -0.578 5.578 14 Si 0.739 3.261 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.218 1.218 18 S 0.387 5.613 19 H 0.082 0.918 20 H 0.088 0.912 21 H 0.088 0.912 22 H 0.147 0.853 23 H 0.151 0.849 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.638 7.118 6.248 12.167 hybrid contribution 0.933 1.045 -0.571 1.513 sum -6.705 8.163 5.676 11.992 Atomic orbital electron populations 1.20222 0.88524 1.02443 1.02175 1.24498 0.99665 0.96814 1.11834 1.19902 0.92996 0.98663 1.05209 1.19939 0.95894 0.95810 1.07228 1.25225 0.99613 0.96295 1.05498 1.18837 0.86939 0.90935 0.91060 0.91768 1.22446 1.02033 1.00025 0.97562 1.42544 1.10152 1.30061 1.53680 1.19289 0.87735 1.09028 1.21248 0.90835 1.24763 0.97312 0.98263 1.00418 1.69681 1.27234 1.20283 1.40623 0.86099 0.83043 0.77997 0.78930 1.20482 1.21815 1.21816 1.84459 0.96269 1.08485 1.72132 0.91771 0.91241 0.91176 0.85263 0.84894 0.92103 0.94051 0.93296 0.78041 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.38 36.01 0.37 -0.48 15 2 C -0.21 -3.20 6.51 -36.00 -0.23 -3.43 15 3 C -0.14 -2.05 10.05 -41.21 -0.41 -2.46 15 4 C -0.16 -2.64 10.04 -41.21 -0.41 -3.05 15 5 C -0.15 -2.81 5.45 -36.00 -0.20 -3.00 15 6 C 0.23 4.93 3.32 -69.08 -0.23 4.70 15 7 H 0.06 1.34 8.06 -51.93 -0.42 0.92 15 8 C -0.16 -3.03 9.47 37.15 0.35 -2.67 15 9 N -0.72 -18.70 5.11 -54.55 -0.28 -18.97 15 10 C -0.24 -6.80 9.93 -15.06 -0.15 -6.94 15 11 H 0.07 1.98 7.83 -52.49 -0.41 1.57 15 12 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 15 13 N -0.93 -28.43 13.06 55.49 0.72 -27.70 15 14 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 15 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 15 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 15 18 S 0.12 2.20 22.30 -107.50 -2.40 -0.19 15 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 22 H 0.13 1.58 8.06 -52.49 -0.42 1.16 15 23 H 0.13 1.95 8.06 -52.48 -0.42 1.52 15 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 27 H 0.38 10.55 6.87 -40.82 -0.28 10.27 15 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 LS Contribution 258.01 15.07 3.89 3.89 Total: -1.00 -30.57 258.01 -7.72 -38.29 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.63 Total: 5.01 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -1.01 Total: -17.78 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.45 Total: -46.68 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.40 Total: -0.19 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.57 -7.72 -38.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049183516.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.401 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds