Wall clock time and date at job start Sun Mar 29 2020 21:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33380 * 125.20446 * 2 1 4 4 C 1.38424 * 114.91979 * 179.85799 * 3 2 1 5 5 C 1.33387 * 114.92317 * 0.43559 * 4 3 2 6 6 C 1.50700 * 125.20870 * 179.79200 * 5 4 3 7 7 H 1.09002 * 109.46909 * 339.99708 * 6 5 4 8 8 C 1.52993 * 109.47402 * 99.99732 * 6 5 4 9 9 N 1.46503 * 109.47148 * 220.00212 * 6 5 4 10 10 C 1.36934 * 119.99742 * 154.99997 * 9 6 5 11 11 H 1.07991 * 120.00740 * 359.97438 * 10 9 6 12 12 C 1.38817 * 119.99491 * 179.97438 * 10 9 6 13 13 N 1.31618 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00046 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46912 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47330 * 119.99795 * 14 12 10 17 17 H 1.48495 * 109.47564 * 240.00543 * 14 12 10 18 18 S 1.75886 * 109.59281 * 359.76596 * 5 4 3 19 19 H 1.08995 * 109.47411 * 179.71626 * 1 2 3 20 20 H 1.08998 * 109.46596 * 299.71565 * 1 2 3 21 21 H 1.09004 * 109.46950 * 59.71385 * 1 2 3 22 22 H 1.08001 * 122.54115 * 0.02562 * 3 2 1 23 23 H 1.08004 * 122.54250 * 180.19862 * 4 3 2 24 24 H 1.09002 * 109.47509 * 180.02562 * 8 6 5 25 25 H 1.09004 * 109.47317 * 299.99938 * 8 6 5 26 26 H 1.09002 * 109.47108 * 60.00098 * 8 6 5 27 27 H 0.96993 * 119.99626 * 334.99188 * 9 6 5 28 28 H 0.96995 * 119.99959 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8427 0.0031 5 6 3.9751 -0.4478 -0.0036 6 6 5.3860 -0.9773 -0.0065 7 1 6.0654 -0.1990 -0.3541 8 6 5.7758 -1.3982 1.4119 9 7 5.4714 -2.1349 -0.9003 10 6 6.6696 -2.4725 -1.4707 11 1 7.5516 -1.8853 -1.2621 12 6 6.7505 -3.5697 -2.3173 13 7 5.6758 -4.2858 -2.5712 14 14 8.3849 -4.0300 -3.0961 15 1 9.4311 -3.0736 -2.6531 16 1 8.7625 -5.4042 -2.6788 17 1 8.2606 -3.9782 -4.5749 18 16 2.5209 -1.4373 -0.0077 19 1 -0.3634 -1.0276 -0.0051 20 1 -0.3632 0.5094 0.8925 21 1 -0.3633 0.5183 -0.8874 22 1 1.8670 2.0894 0.0004 23 1 4.3722 1.6348 0.0066 24 1 6.7965 -1.7808 1.4099 25 1 5.7123 -0.5369 2.0769 26 1 5.0964 -2.1765 1.7595 27 1 4.6792 -2.6622 -1.0879 28 1 5.7323 -5.0522 -3.1630 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049183516.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:14 Heat of formation + Delta-G solvation = 13.648087 kcal Electronic energy + Delta-G solvation = -11603.825531 eV Core-core repulsion = 9552.617024 eV Total energy + Delta-G solvation = -2051.208507 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.11113 -37.10998 -34.25344 -32.23810 -30.26081 -27.33977 -25.89836 -23.87202 -22.31062 -20.24076 -18.79126 -17.80318 -16.52550 -16.23392 -15.34333 -15.08146 -14.91254 -14.29752 -14.03249 -13.75006 -13.35910 -13.17320 -12.86188 -12.68795 -12.61005 -12.43842 -12.13117 -11.93750 -11.75840 -11.39505 -11.04931 -9.34757 -9.28792 -9.06981 -7.96101 -5.26852 0.17652 0.77304 1.23637 1.46829 1.47953 1.58058 1.91341 2.55082 3.38109 3.87027 4.00319 4.07872 4.46264 4.50754 4.63593 4.71218 4.80453 4.84232 4.96796 5.09330 5.14731 5.31320 5.37266 5.47778 5.52912 5.74837 6.24878 7.30856 8.02145 8.27696 9.27800 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.049860 B = 0.008057 C = 0.007485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.435527 B = 3474.517131 C = 3740.124546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.191 4.191 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.183 4.183 6 C 0.230 3.770 7 H 0.064 0.936 8 C -0.149 4.149 9 N -0.737 5.737 10 C -0.243 4.243 11 H 0.081 0.919 12 C -0.075 4.075 13 N -0.971 5.971 14 Si 0.976 3.024 15 H -0.263 1.263 16 H -0.293 1.293 17 H -0.294 1.294 18 S 0.063 5.937 19 H 0.064 0.936 20 H 0.094 0.906 21 H 0.088 0.912 22 H 0.166 0.834 23 H 0.154 0.846 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.373 0.627 28 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.917 10.753 6.833 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.308 4.308 3 C -0.174 4.174 4 C -0.173 4.173 5 C -0.301 4.301 6 C 0.120 3.880 7 H 0.082 0.918 8 C -0.209 4.209 9 N -0.378 5.378 10 C -0.375 4.375 11 H 0.099 0.901 12 C -0.267 4.267 13 N -0.621 5.621 14 Si 0.805 3.195 15 H -0.188 1.188 16 H -0.220 1.220 17 H -0.221 1.221 18 S 0.326 5.674 19 H 0.083 0.917 20 H 0.113 0.887 21 H 0.106 0.894 22 H 0.184 0.816 23 H 0.171 0.829 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.206 0.794 28 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.004 9.218 6.785 13.967 hybrid contribution 0.948 0.540 -0.660 1.275 sum -7.055 9.758 6.125 13.510 Atomic orbital electron populations 1.20396 0.85690 1.03255 1.04184 1.24977 1.01238 0.94869 1.09765 1.20254 0.92139 1.00233 1.04804 1.20318 0.97387 0.95204 1.04377 1.24940 0.98506 0.97201 1.09451 1.18958 0.88748 0.89332 0.90960 0.91783 1.22279 1.00835 1.00885 0.96879 1.42757 1.09039 1.31516 1.54534 1.19705 0.88778 1.08630 1.20364 0.90086 1.25604 1.00700 0.98697 1.01717 1.69847 1.29436 1.20977 1.41890 0.85034 0.79388 0.77590 0.77491 1.18756 1.22048 1.22101 1.84647 0.97835 1.11401 1.73485 0.91674 0.88720 0.89374 0.81626 0.82867 0.93206 0.90931 0.94338 0.79408 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.38 71.24 0.74 -0.76 15 2 C -0.19 -5.34 6.51 24.59 0.16 -5.18 15 3 C -0.14 -3.84 10.05 21.21 0.21 -3.63 15 4 C -0.14 -4.39 10.04 21.22 0.21 -4.18 15 5 C -0.18 -6.84 5.45 24.59 0.13 -6.71 15 6 C 0.23 9.66 3.32 44.24 0.15 9.81 15 7 H 0.06 2.65 8.06 -2.39 -0.02 2.63 15 8 C -0.15 -5.56 9.47 71.98 0.68 -4.88 15 9 N -0.74 -38.92 5.11 -326.51 -1.67 -40.58 15 10 C -0.24 -13.79 9.93 84.04 0.83 -12.95 15 11 H 0.08 4.35 7.83 -2.92 -0.02 4.33 15 12 C -0.08 -4.39 5.50 84.86 0.47 -3.92 15 13 N -0.97 -60.91 13.06 21.65 0.28 -60.63 15 14 Si 0.98 46.74 29.55 68.60 2.03 48.76 15 15 H -0.26 -11.74 7.11 99.48 0.71 -11.03 15 16 H -0.29 -14.02 7.11 99.48 0.71 -13.32 15 17 H -0.29 -14.07 7.11 99.48 0.71 -13.37 15 18 S 0.06 2.26 22.30 -56.49 -1.26 1.00 15 19 H 0.06 1.28 8.14 -2.39 -0.02 1.26 15 20 H 0.09 1.43 8.14 -2.39 -0.02 1.41 15 21 H 0.09 1.46 8.14 -2.39 -0.02 1.44 15 22 H 0.17 3.21 8.06 -2.91 -0.02 3.19 15 23 H 0.15 4.00 8.06 -2.91 -0.02 3.98 15 24 H 0.05 1.92 8.14 -2.39 -0.02 1.91 15 25 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 27 H 0.37 21.19 6.87 -92.71 -0.64 20.55 15 28 H 0.25 15.21 8.31 -92.71 -0.77 14.44 15 Total: -1.00 -66.23 258.01 3.48 -62.75 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.51 Total: 21.09 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 3.59 Total: -32.39 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -1.38 Total: -101.21 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.26 Total: 1.00 kcal Total: -66.23 3.48 -62.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049183516.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.395 kcal (2) G-P(sol) polarization free energy of solvation -66.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds