Wall clock time and date at job start Sun Mar 29 2020 21:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33389 * 125.19823 * 2 1 4 4 C 1.38431 * 114.91667 * 179.75036 * 3 2 1 5 5 C 1.33380 * 114.92134 * 0.43170 * 4 3 2 6 6 C 1.50706 * 125.20244 * 179.86269 * 5 4 3 7 7 H 1.09000 * 109.47318 * 19.71141 * 6 5 4 8 8 C 1.53002 * 109.46925 * 259.71907 * 6 5 4 9 9 N 1.46496 * 109.47106 * 139.71805 * 6 5 4 10 10 C 1.36938 * 119.99838 * 204.99489 * 9 6 5 11 11 H 1.08000 * 119.99937 * 0.02562 * 10 9 6 12 12 C 1.38819 * 120.00138 * 179.97438 * 10 9 6 13 13 N 1.31618 * 119.99820 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00166 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47102 * 89.99813 * 14 12 10 16 16 H 1.48499 * 109.47032 * 210.00173 * 14 12 10 17 17 H 1.48502 * 109.46930 * 330.00074 * 14 12 10 18 18 S 1.75879 * 125.20798 * 179.97438 * 2 1 3 19 19 H 1.09002 * 109.46890 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.47347 * 299.99727 * 1 2 3 21 21 H 1.09000 * 109.47298 * 60.00158 * 1 2 3 22 22 H 1.08004 * 122.54433 * 359.97438 * 3 2 1 23 23 H 1.08008 * 122.53766 * 180.27747 * 4 3 2 24 24 H 1.09004 * 109.47059 * 59.99503 * 8 6 5 25 25 H 1.08992 * 109.47060 * 179.97438 * 8 6 5 26 26 H 1.09004 * 109.46930 * 299.99901 * 8 6 5 27 27 H 0.97006 * 120.00135 * 25.00196 * 9 6 5 28 28 H 0.97001 * 120.00197 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0055 5 6 3.9751 -0.4475 0.0008 6 6 5.3861 -0.9769 0.0022 7 1 6.0652 -0.2002 0.3539 8 6 5.7768 -1.3909 -1.4180 9 7 5.4710 -2.1387 0.8904 10 6 6.6688 -2.4790 1.4600 11 1 7.5509 -1.8906 1.2548 12 6 6.7492 -3.5797 2.3021 13 7 5.6741 -4.2964 2.5527 14 14 8.3831 -4.0435 3.0797 15 1 8.5260 -3.3475 4.3837 16 1 8.4298 -5.5121 3.2947 17 1 9.4923 -3.6395 2.1789 18 16 2.5210 -1.4370 0.0006 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8668 2.0896 -0.0004 23 1 4.3720 1.6352 0.0105 24 1 5.7136 -0.5264 -2.0789 25 1 6.7975 -1.7733 -1.4171 26 1 5.0977 -2.1676 -1.7698 27 1 4.6786 -2.6670 1.0750 28 1 5.7303 -5.0658 3.1408 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049183518.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:16 Heat of formation + Delta-G solvation = 13.725646 kcal Electronic energy + Delta-G solvation = -11603.875489 eV Core-core repulsion = 9552.670345 eV Total energy + Delta-G solvation = -2051.205144 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.11030 -37.10764 -34.25152 -32.23789 -30.25904 -27.34030 -25.89368 -23.87155 -22.30906 -20.24051 -18.78970 -17.80139 -16.52666 -16.23064 -15.34707 -15.07906 -14.90837 -14.29745 -14.03123 -13.74998 -13.35734 -13.17283 -12.84016 -12.68142 -12.60654 -12.43747 -12.17040 -11.94077 -11.76271 -11.39521 -11.03362 -9.34704 -9.28743 -9.06923 -7.95787 -5.26583 0.17636 0.77304 1.23684 1.46755 1.48999 1.57336 1.91322 2.55333 3.38221 3.87099 4.00456 4.07913 4.46233 4.50731 4.63554 4.71232 4.80451 4.84199 4.96802 5.09343 5.14712 5.31287 5.37222 5.47613 5.52895 5.74818 6.24980 7.30980 8.02351 8.27924 9.27880 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.049845 B = 0.008058 C = 0.007486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.605165 B = 3473.917599 C = 3739.661017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.191 4.191 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.183 4.183 6 C 0.230 3.770 7 H 0.064 0.936 8 C -0.149 4.149 9 N -0.737 5.737 10 C -0.245 4.245 11 H 0.081 0.919 12 C -0.075 4.075 13 N -0.971 5.971 14 Si 0.977 3.023 15 H -0.287 1.287 16 H -0.296 1.296 17 H -0.267 1.267 18 S 0.063 5.937 19 H 0.064 0.936 20 H 0.088 0.912 21 H 0.094 0.906 22 H 0.166 0.834 23 H 0.154 0.846 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.373 0.627 28 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 10.714 -6.784 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.309 4.309 3 C -0.174 4.174 4 C -0.173 4.173 5 C -0.301 4.301 6 C 0.120 3.880 7 H 0.082 0.918 8 C -0.209 4.209 9 N -0.378 5.378 10 C -0.376 4.376 11 H 0.099 0.901 12 C -0.267 4.267 13 N -0.621 5.621 14 Si 0.805 3.195 15 H -0.214 1.214 16 H -0.222 1.222 17 H -0.192 1.192 18 S 0.327 5.673 19 H 0.083 0.917 20 H 0.106 0.894 21 H 0.113 0.887 22 H 0.184 0.816 23 H 0.171 0.829 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.206 0.794 28 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.005 9.167 -6.744 13.915 hybrid contribution 0.955 0.563 0.669 1.295 sum -7.051 9.731 -6.076 13.465 Atomic orbital electron populations 1.20396 0.85689 1.03258 1.04183 1.24977 1.01241 0.94875 1.09763 1.20258 0.92134 1.00231 1.04813 1.20321 0.97387 0.95217 1.04369 1.24940 0.98512 0.97196 1.09459 1.18959 0.88743 0.89273 0.91020 0.91791 1.22278 1.00822 1.00891 0.96878 1.42752 1.09057 1.31124 1.54908 1.19670 0.88808 1.08485 1.20658 0.90120 1.25605 1.00714 0.98660 1.01704 1.69842 1.29477 1.20737 1.42060 0.85096 0.79415 0.76551 0.78420 1.21411 1.22236 1.19171 1.84641 0.97820 1.11392 1.73479 0.91673 0.89375 0.88718 0.81626 0.82876 0.90935 0.93227 0.94335 0.79402 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.38 71.24 0.74 -0.76 15 2 C -0.19 -5.34 6.51 24.59 0.16 -5.18 15 3 C -0.14 -3.84 10.05 21.22 0.21 -3.63 15 4 C -0.14 -4.40 10.04 21.22 0.21 -4.19 15 5 C -0.18 -6.85 5.45 24.59 0.13 -6.72 15 6 C 0.23 9.67 3.32 44.25 0.15 9.82 15 7 H 0.06 2.65 8.06 -2.39 -0.02 2.63 15 8 C -0.15 -5.56 9.47 71.98 0.68 -4.88 15 9 N -0.74 -38.94 5.11 -326.49 -1.67 -40.61 15 10 C -0.24 -13.88 9.93 84.04 0.83 -13.05 15 11 H 0.08 4.33 7.83 -2.91 -0.02 4.31 15 12 C -0.07 -4.36 5.50 84.86 0.47 -3.90 15 13 N -0.97 -60.88 13.06 21.65 0.28 -60.60 15 14 Si 0.98 46.72 29.55 68.60 2.03 48.75 15 15 H -0.29 -13.50 7.11 99.48 0.71 -12.79 15 16 H -0.30 -14.25 7.11 99.48 0.71 -13.54 15 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 18 S 0.06 2.28 22.29 -56.49 -1.26 1.02 15 19 H 0.06 1.28 8.14 -2.39 -0.02 1.26 15 20 H 0.09 1.47 8.14 -2.38 -0.02 1.45 15 21 H 0.09 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.17 3.22 8.06 -2.91 -0.02 3.19 15 23 H 0.15 4.01 8.06 -2.91 -0.02 3.99 15 24 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 15 26 H 0.04 1.49 8.14 -2.38 -0.02 1.47 15 27 H 0.37 21.20 6.87 -92.70 -0.64 20.56 15 28 H 0.25 15.24 8.31 -92.71 -0.77 14.47 15 Total: -1.00 -66.18 258.01 3.48 -62.70 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.51 Total: 21.22 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 3.59 Total: -32.48 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -1.38 Total: -101.21 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.26 Total: 1.02 kcal Total: -66.18 3.48 -62.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049183518.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.425 kcal (2) G-P(sol) polarization free energy of solvation -66.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds