Wall clock time and date at job start Sun Mar 29 2020 21:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 N 1.46906 * 109.46794 * 125.27501 * 3 2 1 5 5 C 1.46952 * 110.99885 * 293.80041 * 4 3 2 6 6 C 1.53052 * 109.36100 * 176.80947 * 5 4 3 7 7 N 1.46962 * 109.36362 * 58.40634 * 6 5 4 8 8 C 1.46898 * 111.00131 * 176.81068 * 7 6 5 9 9 C 1.50698 * 109.47053 * 293.79812 * 8 7 6 10 10 H 1.07995 * 120.00315 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00178 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99788 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00404 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46736 * 0.02562 * 13 11 9 15 15 H 1.48490 * 109.47218 * 119.99862 * 13 11 9 16 16 H 1.48501 * 109.47484 * 240.00585 * 13 11 9 17 17 C 1.46960 * 110.87746 * 300.67503 * 7 6 5 18 18 C 1.46959 * 110.99835 * 169.99879 * 4 3 2 19 19 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 20 20 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 21 21 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 22 22 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 23 23 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 24 24 H 1.08994 * 109.49220 * 296.77857 * 5 4 3 25 25 H 1.08998 * 109.49101 * 56.84878 * 5 4 3 26 26 H 1.09001 * 109.49532 * 298.43793 * 6 5 4 27 27 H 1.08999 * 109.48868 * 178.36797 * 6 5 4 28 28 H 1.09001 * 109.47322 * 53.79483 * 8 7 6 29 29 H 1.08998 * 109.47504 * 173.79551 * 8 7 6 30 30 H 0.97001 * 120.00046 * 180.02562 * 12 11 9 31 31 H 1.09004 * 109.49082 * 299.35497 * 17 7 6 32 32 H 1.08997 * 109.50655 * 179.29710 * 17 7 6 33 33 H 1.08999 * 109.49008 * 303.15799 * 18 4 3 34 34 H 1.09001 * 109.48793 * 63.22747 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0009 1.3292 1.1308 5 6 2.2808 1.3449 2.4116 6 6 3.2894 1.2894 3.5615 7 7 4.2056 2.4341 3.4617 8 6 5.1431 2.4582 4.5924 9 6 4.3849 2.7202 5.8681 10 1 3.3138 2.8557 5.8416 11 6 5.0586 2.7870 7.0692 12 7 6.3630 2.6224 7.1015 13 14 4.1190 3.1124 8.6505 14 1 2.6732 3.2607 8.3454 15 1 4.3131 1.9747 9.5848 16 1 4.6233 4.3602 9.2782 17 6 4.9257 2.4185 2.1807 18 6 3.9172 2.4739 1.0309 19 1 -0.5400 -0.9353 -0.0045 20 1 -0.5401 0.9353 0.0045 21 1 1.8500 -0.9353 -0.0046 22 1 2.6173 1.4049 -0.9334 23 1 1.3589 2.1314 0.0945 24 1 1.6931 2.2597 2.4873 25 1 1.6184 0.4810 2.4670 26 1 3.8586 0.3617 3.5016 27 1 2.7589 1.3301 4.5128 28 1 5.6519 1.4968 4.6631 29 1 5.8784 3.2479 4.4380 30 1 6.8370 2.6690 7.9465 31 1 5.5135 1.5036 2.1051 32 1 5.5883 3.2821 2.1251 33 1 4.4476 2.4331 0.0795 34 1 3.3480 3.4016 1.0909 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049805590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:16 Heat of formation + Delta-G solvation = 29.561624 kcal Electronic energy + Delta-G solvation = -14029.190173 eV Core-core repulsion = 11769.470614 eV Total energy + Delta-G solvation = -2259.719559 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.79559 -35.73072 -33.29577 -32.12913 -30.36164 -28.29107 -25.86875 -23.59008 -22.95334 -21.32759 -19.73868 -19.10426 -16.29973 -16.03178 -15.19411 -14.61130 -14.39751 -14.19090 -13.96445 -13.61054 -13.14132 -12.68613 -12.07544 -11.92892 -11.72451 -11.15739 -11.08020 -10.84336 -10.70827 -10.58272 -10.35540 -10.25664 -9.69511 -9.43777 -9.13414 -8.42502 -8.11175 -7.19548 -6.01061 -4.02323 2.21739 3.31979 3.39213 3.44132 4.19940 4.44026 4.91982 4.99884 5.11587 5.34530 5.38186 5.43997 5.59465 5.63540 5.82097 5.82840 5.93024 5.97833 6.11193 6.23453 6.46560 6.56541 6.59504 6.69235 6.72870 7.23010 7.29465 7.38544 7.41920 7.82547 8.11634 8.23869 8.58028 9.05648 9.61909 11.09938 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049273 B = 0.006815 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.128710 B = 4107.319344 C = 4513.921172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 C 0.078 3.922 4 N -0.538 5.538 5 C 0.059 3.941 6 C 0.067 3.933 7 N -0.539 5.539 8 C 0.193 3.807 9 C -0.506 4.506 10 H 0.063 0.937 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.056 3.944 18 C 0.061 3.939 19 H 0.097 0.903 20 H 0.093 0.907 21 H 0.112 0.888 22 H 0.079 0.921 23 H 0.035 0.965 24 H 0.037 0.963 25 H 0.071 0.929 26 H 0.028 0.972 27 H 0.086 0.914 28 H -0.008 1.008 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.911 -3.078 -12.539 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.155 4.155 3 C -0.049 4.049 4 N -0.263 5.263 5 C -0.069 4.069 6 C -0.061 4.061 7 N -0.265 5.265 8 C 0.068 3.932 9 C -0.545 4.545 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.073 4.073 18 C -0.067 4.067 19 H 0.115 0.885 20 H 0.111 0.889 21 H 0.130 0.870 22 H 0.097 0.903 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.104 0.896 28 H 0.009 0.991 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.742 -3.062 -12.404 14.939 hybrid contribution -0.342 0.140 0.926 0.997 sum -8.084 -2.921 -11.478 14.340 Atomic orbital electron populations 1.23822 0.95924 1.01667 1.02299 1.22919 0.95482 0.98766 0.98283 1.21225 0.94320 0.94513 0.94847 1.62172 1.18976 1.43043 1.02070 1.22243 0.95903 1.00106 0.88629 1.21994 0.94624 0.92208 0.97299 1.62284 1.20942 1.41069 1.02165 1.19709 0.90634 0.95842 0.87047 1.21200 0.94460 1.47983 0.90837 0.91889 1.24994 0.94883 0.95545 0.99223 1.69972 1.07063 1.50594 1.26223 0.86450 0.80084 0.77755 0.83187 1.19689 1.21106 1.21021 1.22064 0.94901 1.00228 0.90085 1.22166 0.94672 0.91378 0.98529 0.88490 0.88866 0.86955 0.90302 0.94647 0.94504 0.91082 0.95359 0.89610 0.99057 0.95225 0.92997 0.95141 0.91006 0.91205 0.94351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 14.32 29.02 0.42 -1.60 16 2 C -0.14 -1.55 8.58 -36.02 -0.31 -1.86 16 3 C 0.08 0.98 5.40 -4.97 -0.03 0.95 16 4 N -0.54 -8.33 4.70 -235.91 -1.11 -9.44 16 5 C 0.06 0.99 5.44 -3.77 -0.02 0.97 16 6 C 0.07 1.38 5.43 -3.76 -0.02 1.36 16 7 N -0.54 -12.08 4.70 -235.90 -1.11 -13.19 16 8 C 0.19 5.15 4.72 -4.98 -0.02 5.12 16 9 C -0.51 -14.42 8.47 -34.44 -0.29 -14.71 16 10 H 0.06 1.78 7.13 -52.49 -0.37 1.40 16 11 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 13 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 18 C 0.06 0.95 5.61 -3.77 -0.02 0.93 16 19 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 20 H 0.09 0.91 7.84 -52.49 -0.41 0.49 16 21 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 22 H 0.08 0.88 8.03 -51.93 -0.42 0.47 16 23 H 0.04 0.44 7.77 -51.93 -0.40 0.04 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.09 7.20 -51.93 -0.37 0.72 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.86 6.79 -51.93 -0.35 1.50 16 28 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 29 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 33 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 276.62 15.07 4.17 4.17 Total: -1.00 -29.97 276.62 -8.43 -38.40 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.68 Total: -4.12 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -0.42 Total: -6.33 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -1.48 Total: -48.90 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.97 -8.43 -38.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049805590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.959 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds