Wall clock time and date at job start Sun Mar 29 2020 21:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 N 1.46906 * 109.46794 * 125.27501 * 3 2 1 5 5 C 1.46952 * 110.99885 * 293.80041 * 4 3 2 6 6 C 1.53052 * 109.36100 * 176.80947 * 5 4 3 7 7 N 1.46962 * 109.36362 * 58.40634 * 6 5 4 8 8 C 1.46898 * 111.00131 * 176.81068 * 7 6 5 9 9 C 1.50698 * 109.47053 * 293.79812 * 8 7 6 10 10 H 1.07995 * 120.00315 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00178 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99788 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00404 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46736 * 0.02562 * 13 11 9 15 15 H 1.48490 * 109.47218 * 119.99862 * 13 11 9 16 16 H 1.48501 * 109.47484 * 240.00585 * 13 11 9 17 17 C 1.46960 * 110.87746 * 300.67503 * 7 6 5 18 18 C 1.46959 * 110.99835 * 169.99879 * 4 3 2 19 19 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 20 20 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 21 21 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 22 22 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 23 23 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 24 24 H 1.08994 * 109.49220 * 296.77857 * 5 4 3 25 25 H 1.08998 * 109.49101 * 56.84878 * 5 4 3 26 26 H 1.09001 * 109.49532 * 298.43793 * 6 5 4 27 27 H 1.08999 * 109.48868 * 178.36797 * 6 5 4 28 28 H 1.09001 * 109.47322 * 53.79483 * 8 7 6 29 29 H 1.08998 * 109.47504 * 173.79551 * 8 7 6 30 30 H 0.97001 * 120.00046 * 180.02562 * 12 11 9 31 31 H 1.09004 * 109.49082 * 299.35497 * 17 7 6 32 32 H 1.08997 * 109.50655 * 179.29710 * 17 7 6 33 33 H 1.08999 * 109.49008 * 303.15799 * 18 4 3 34 34 H 1.09001 * 109.48793 * 63.22747 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0009 1.3292 1.1308 5 6 2.2808 1.3449 2.4116 6 6 3.2894 1.2894 3.5615 7 7 4.2056 2.4341 3.4617 8 6 5.1431 2.4582 4.5924 9 6 4.3849 2.7202 5.8681 10 1 3.3138 2.8557 5.8416 11 6 5.0586 2.7870 7.0692 12 7 6.3630 2.6224 7.1015 13 14 4.1190 3.1124 8.6505 14 1 2.6732 3.2607 8.3454 15 1 4.3131 1.9747 9.5848 16 1 4.6233 4.3602 9.2782 17 6 4.9257 2.4185 2.1807 18 6 3.9172 2.4739 1.0309 19 1 -0.5400 -0.9353 -0.0045 20 1 -0.5401 0.9353 0.0045 21 1 1.8500 -0.9353 -0.0046 22 1 2.6173 1.4049 -0.9334 23 1 1.3589 2.1314 0.0945 24 1 1.6931 2.2597 2.4873 25 1 1.6184 0.4810 2.4670 26 1 3.8586 0.3617 3.5016 27 1 2.7589 1.3301 4.5128 28 1 5.6519 1.4968 4.6631 29 1 5.8784 3.2479 4.4380 30 1 6.8370 2.6690 7.9465 31 1 5.5135 1.5036 2.1051 32 1 5.5883 3.2821 2.1251 33 1 4.4476 2.4331 0.0795 34 1 3.3480 3.4016 1.0909 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049805590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:16 Heat of formation + Delta-G solvation = 8.448666 kcal Electronic energy + Delta-G solvation = -14030.105699 eV Core-core repulsion = 11769.470614 eV Total energy + Delta-G solvation = -2260.635085 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.21412 -37.17403 -34.94527 -33.74465 -31.82693 -29.99726 -27.51965 -25.10993 -24.41181 -23.17326 -20.69481 -20.52724 -18.50009 -17.38328 -16.55028 -16.28437 -15.85234 -15.58290 -15.37863 -15.21250 -14.60746 -14.18012 -13.74963 -13.35855 -13.27302 -12.79325 -12.70599 -12.36712 -12.29846 -12.15558 -12.05121 -11.81938 -11.43783 -11.18998 -10.63544 -10.26572 -9.34571 -9.04593 -8.21846 -6.32484 1.39017 1.40718 1.41191 1.55093 2.39701 3.02169 3.10438 3.29019 3.99448 4.00512 4.18893 4.20019 4.36400 4.41756 4.47664 4.65366 4.68977 4.78998 4.85062 4.96275 4.99741 5.04690 5.11172 5.21150 5.26248 5.62566 5.75204 5.77327 6.01568 6.07184 6.16893 6.33937 6.61030 6.83507 7.37487 8.89812 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049273 B = 0.006815 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.128710 B = 4107.319344 C = 4513.921172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.155 4.155 3 C 0.081 3.919 4 N -0.547 5.547 5 C 0.074 3.926 6 C 0.069 3.931 7 N -0.546 5.546 8 C 0.208 3.792 9 C -0.524 4.524 10 H 0.062 0.938 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.972 3.028 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.053 3.947 18 C 0.070 3.930 19 H 0.111 0.889 20 H 0.099 0.901 21 H 0.111 0.889 22 H 0.095 0.905 23 H 0.040 0.960 24 H 0.034 0.966 25 H 0.088 0.912 26 H 0.014 0.986 27 H 0.068 0.932 28 H -0.041 1.041 29 H 0.005 0.995 30 H 0.265 0.735 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.732 -3.043 -13.288 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.173 4.173 3 C -0.045 4.045 4 N -0.273 5.273 5 C -0.055 4.055 6 C -0.059 4.059 7 N -0.271 5.271 8 C 0.081 3.919 9 C -0.562 4.562 10 H 0.081 0.919 11 C -0.197 4.197 12 N -0.576 5.576 13 Si 0.796 3.204 14 H -0.187 1.187 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.076 4.076 18 C -0.058 4.058 19 H 0.129 0.871 20 H 0.117 0.883 21 H 0.129 0.871 22 H 0.113 0.887 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.107 0.893 26 H 0.033 0.967 27 H 0.086 0.914 28 H -0.023 1.023 29 H 0.023 0.977 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.578 -3.031 -13.186 16.577 hybrid contribution 0.233 0.103 1.092 1.122 sum -9.344 -2.928 -12.094 15.561 Atomic orbital electron populations 1.24011 0.95552 1.02664 1.00054 1.22871 0.95927 0.98216 1.00318 1.21283 0.94030 0.95265 0.93968 1.62152 1.19809 1.42895 1.02394 1.22040 0.94671 1.00740 0.88003 1.21974 0.94704 0.90784 0.98476 1.62227 1.20425 1.42132 1.02305 1.19365 0.90664 0.93072 0.88752 1.21473 0.94552 1.48288 0.91892 0.91945 1.25946 0.95804 0.94932 1.03010 1.70098 1.08800 1.51231 1.27451 0.85294 0.78911 0.77842 0.78324 1.18699 1.20308 1.20269 1.22184 0.95897 0.99811 0.89685 1.22101 0.94101 0.91552 0.98080 0.87079 0.88302 0.87131 0.88725 0.94227 0.94775 0.89343 0.96727 0.91408 1.02309 0.97711 0.92621 0.96098 0.90889 0.88095 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 14.32 67.79 0.97 -2.21 16 2 C -0.15 -3.12 8.58 25.65 0.22 -2.90 16 3 C 0.08 1.79 5.40 85.56 0.46 2.25 16 4 N -0.55 -15.86 4.70 -900.28 -4.23 -20.09 16 5 C 0.07 2.37 5.44 86.31 0.47 2.84 16 6 C 0.07 2.86 5.43 86.31 0.47 3.33 16 7 N -0.55 -24.97 4.70 -900.27 -4.23 -29.20 16 8 C 0.21 11.57 4.72 85.56 0.40 11.98 16 9 C -0.52 -30.50 8.47 25.60 0.22 -30.28 16 10 H 0.06 3.57 7.13 -2.91 -0.02 3.55 16 11 C 0.00 0.06 5.46 84.66 0.46 0.52 16 12 N -0.94 -57.33 13.29 21.45 0.28 -57.04 16 13 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 14 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 17 C 0.05 2.00 5.61 86.31 0.48 2.49 16 18 C 0.07 2.05 5.61 86.31 0.48 2.53 16 19 H 0.11 1.60 8.06 -2.91 -0.02 1.57 16 20 H 0.10 1.60 7.84 -2.91 -0.02 1.58 16 21 H 0.11 2.27 8.06 -2.91 -0.02 2.25 16 22 H 0.09 1.79 8.03 -2.39 -0.02 1.77 16 23 H 0.04 0.86 7.77 -2.39 -0.02 0.84 16 24 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 25 H 0.09 2.55 7.20 -2.39 -0.02 2.53 16 26 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 3.00 6.79 -2.39 -0.02 2.98 16 28 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 29 H 0.00 0.28 8.03 -2.39 -0.02 0.27 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.07 2.70 8.07 -2.39 -0.02 2.68 16 33 H 0.10 2.38 8.07 -2.39 -0.02 2.36 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -64.89 276.62 -0.48 -65.36 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.03 Total: 3.56 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 4.64 Total: -9.46 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -8.18 Total: -106.33 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.89 -0.48 -65.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049805590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.812 kcal (2) G-P(sol) polarization free energy of solvation -64.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds