Wall clock time and date at job start Sun Mar 29 2020 22:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 5 5 C 1.46901 * 110.99793 * 85.00144 * 4 2 1 6 6 C 1.50701 * 109.46921 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99594 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47061 * 90.00257 * 10 8 6 12 12 H 1.48497 * 109.46906 * 209.99430 * 10 8 6 13 13 H 1.48498 * 109.47403 * 329.99876 * 10 8 6 14 14 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 15 15 C 1.38419 * 122.53686 * 259.74119 * 14 2 1 16 16 C 1.33391 * 114.91954 * 179.75751 * 15 14 2 17 17 S 1.75884 * 109.59463 * 0.47518 * 16 15 14 18 18 C 1.33391 * 122.54051 * 80.02047 * 14 2 1 19 19 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 20 20 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 21 21 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 22 22 H 1.00899 * 110.99995 * 321.04542 * 4 2 1 23 23 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 24 24 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 25 25 H 0.97002 * 119.99739 * 180.02562 * 9 8 6 26 26 H 1.07998 * 122.54400 * 359.97438 * 15 14 2 27 27 H 1.08005 * 125.20599 * 180.20443 * 16 15 14 28 28 H 1.07998 * 125.20050 * 359.97438 * 18 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5884 -0.5216 -3.5558 7 1 2.8379 -1.5695 -3.4794 8 6 2.7318 0.1353 -4.7595 9 7 3.1729 -0.5142 -5.8145 10 14 2.2994 1.9478 -4.8917 11 1 3.4999 2.7666 -4.5855 12 1 1.8351 2.2466 -6.2702 13 1 1.2198 2.2710 -3.9247 14 6 2.0324 -0.7104 1.2304 15 6 2.4765 -0.0323 2.3524 16 6 2.8829 -0.8115 3.3559 17 16 2.7236 -2.5008 2.8927 18 6 2.0879 -2.0402 1.3188 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.4495 -1.4980 -1.4100 23 1 2.7588 1.0462 -2.1183 24 1 1.0870 0.6163 -2.5525 25 1 3.2741 -0.0520 -6.6613 26 1 2.4896 1.0459 2.4123 27 1 3.2569 -0.4591 4.3058 28 1 1.7878 -2.7288 0.5427 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050339580.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:09 Heat of formation + Delta-G solvation = 30.252080 kcal Electronic energy + Delta-G solvation = -11582.097936 eV Core-core repulsion = 9531.609431 eV Total energy + Delta-G solvation = -2050.488504 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.54082 -35.38710 -32.60503 -30.26741 -28.56506 -26.39639 -24.45420 -21.76630 -20.68518 -18.41222 -17.52384 -16.71371 -15.21304 -14.67755 -13.95880 -13.90102 -13.39078 -12.97641 -12.61334 -12.44705 -12.18999 -11.97648 -11.65711 -11.47012 -10.98905 -10.72187 -10.57531 -10.30554 -9.83873 -9.30674 -8.59753 -8.55570 -8.15554 -7.46965 -6.06168 -4.04073 1.25594 1.87951 2.19615 2.97460 3.28493 3.35620 3.37267 4.41460 4.89081 5.24218 5.26995 5.34185 5.48327 5.59197 5.63732 5.81403 6.05888 6.06982 6.29823 6.35016 6.60695 6.77828 6.81501 7.02717 7.59764 7.89078 8.31115 8.64395 9.01906 9.55647 11.07175 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.053271 B = 0.006896 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.487433 B = 4059.503219 C = 4271.551922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.135 3.865 3 H 0.080 0.920 4 N -0.671 5.671 5 C 0.164 3.836 6 C -0.516 4.516 7 H 0.079 0.921 8 C 0.068 3.932 9 N -0.900 5.900 10 Si 0.877 3.123 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.267 1.267 14 C -0.083 4.083 15 C -0.123 4.123 16 C -0.221 4.221 17 S 0.063 5.937 18 C -0.183 4.183 19 H 0.054 0.946 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.335 0.665 23 H 0.022 0.978 24 H -0.014 1.014 25 H 0.264 0.736 26 H 0.136 0.864 27 H 0.159 0.841 28 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 0.405 16.555 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.021 3.979 3 H 0.098 0.902 4 N -0.301 5.301 5 C 0.037 3.963 6 C -0.554 4.554 7 H 0.097 0.903 8 C -0.133 4.133 9 N -0.539 5.539 10 Si 0.705 3.295 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.095 4.095 15 C -0.154 4.154 16 C -0.356 4.356 17 S 0.326 5.674 18 C -0.318 4.318 19 H 0.073 0.927 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.153 0.847 23 H 0.040 0.960 24 H 0.004 0.996 25 H 0.073 0.927 26 H 0.154 0.846 27 H 0.176 0.824 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.006 -0.879 17.232 17.514 hybrid contribution -1.307 2.411 -1.126 2.964 sum -4.313 1.532 16.106 16.744 Atomic orbital electron populations 1.22475 0.97022 1.02024 1.01778 1.20187 0.91930 0.97063 0.88673 0.90212 1.60572 1.55751 1.10030 1.03762 1.20032 0.94640 0.92764 0.88889 1.21053 1.43593 0.98881 0.91854 0.90329 1.24905 0.94781 0.98006 0.95639 1.69901 1.46570 1.36542 1.00919 0.86824 0.79279 0.86039 0.77382 1.20146 1.21237 1.19229 1.18981 1.01308 0.93048 0.96201 1.20092 1.01536 1.00966 0.92855 1.25430 1.10591 0.95727 1.03826 1.84093 1.64490 1.07697 1.11127 1.25333 1.08035 0.98954 0.99515 0.92733 0.92153 0.92543 0.84671 0.96011 0.99635 0.92653 0.84618 0.82359 0.81909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.14 37.16 0.34 -2.21 15 2 C 0.13 2.26 2.88 -68.86 -0.20 2.07 15 3 H 0.08 1.36 7.74 -51.93 -0.40 0.96 15 4 N -0.67 -13.76 5.79 -109.21 -0.63 -14.39 15 5 C 0.16 3.97 4.31 -4.97 -0.02 3.94 15 6 C -0.52 -14.77 9.87 -34.44 -0.34 -15.11 15 7 H 0.08 2.44 8.06 -52.49 -0.42 2.02 15 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 9 N -0.90 -27.77 13.96 55.43 0.77 -26.99 15 10 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 15 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 15 13 H -0.27 -6.30 6.54 56.52 0.37 -5.93 15 14 C -0.08 -1.28 4.86 -106.25 -0.52 -1.80 15 15 C -0.12 -1.66 9.95 -41.21 -0.41 -2.07 15 16 C -0.22 -2.68 11.23 29.04 0.33 -2.36 15 17 S 0.06 0.80 23.34 -107.50 -2.51 -1.71 15 18 C -0.18 -2.70 10.52 29.04 0.31 -2.39 15 19 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.06 0.94 7.45 -51.93 -0.39 0.55 15 21 H 0.06 0.79 8.13 -51.93 -0.42 0.36 15 22 H 0.34 6.62 8.22 -39.29 -0.32 6.30 15 23 H 0.02 0.54 7.48 -51.93 -0.39 0.15 15 24 H -0.01 -0.33 6.49 -51.93 -0.34 -0.67 15 25 H 0.26 7.59 8.31 -40.82 -0.34 7.26 15 26 H 0.14 1.60 8.06 -52.49 -0.42 1.17 15 27 H 0.16 1.49 8.06 -52.48 -0.42 1.07 15 28 H 0.16 2.35 7.80 -52.49 -0.41 1.94 15 LS Contribution 253.48 15.07 3.82 3.82 Total: -1.00 -30.45 253.48 -7.36 -37.81 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.53 Total: 2.60 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -0.61 Total: -18.03 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.14 Total: -41.39 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.45 -7.36 -37.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050339580.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.059 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds