Wall clock time and date at job start Sun Mar 29 2020 21:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47027 * 2 1 4 4 C 1.50699 * 109.47319 * 120.00609 * 2 1 3 5 5 H 1.07998 * 120.00400 * 119.99960 * 4 2 1 6 6 C 1.37879 * 119.99479 * 299.99553 * 4 2 1 7 7 N 1.31513 * 120.00406 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99709 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47128 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47312 * 120.00281 * 8 6 4 11 11 H 1.48511 * 109.46779 * 239.99848 * 8 6 4 12 12 N 1.46907 * 109.46669 * 240.00416 * 2 1 3 13 13 C 1.46897 * 111.00219 * 85.00074 * 12 2 1 14 14 C 1.50696 * 109.46976 * 179.97438 * 13 12 2 15 15 N 1.30517 * 126.34429 * 270.03676 * 14 13 12 16 16 N 1.28600 * 109.67250 * 179.97438 * 15 14 13 17 17 C 1.30526 * 109.67197 * 359.72320 * 16 15 14 18 18 N 1.35494 * 107.30545 * 0.43817 * 17 16 15 19 19 C 1.46499 * 126.97935 * 179.83284 * 18 17 16 20 20 H 1.09000 * 109.46485 * 299.99572 * 1 2 3 21 21 H 1.08994 * 109.47203 * 59.99571 * 1 2 3 22 22 H 1.09001 * 109.47027 * 180.02562 * 1 2 3 23 23 H 0.96999 * 120.00361 * 180.02562 * 7 6 4 24 24 H 1.00898 * 110.99855 * 321.04260 * 12 2 1 25 25 H 1.09001 * 109.47328 * 59.99309 * 13 12 2 26 26 H 1.09007 * 109.46871 * 299.99425 * 13 12 2 27 27 H 1.07996 * 126.34830 * 180.29376 * 17 16 15 28 28 H 1.09002 * 109.47391 * 269.68706 * 19 18 17 29 29 H 1.09001 * 109.46813 * 149.68762 * 19 18 17 30 30 H 1.09004 * 109.47041 * 29.68889 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.1475 -2.2865 3.6036 10 1 3.1474 -0.1860 4.8160 11 1 1.1679 -1.5868 4.8164 12 7 2.0196 -0.6925 -1.1996 13 6 2.0824 0.2227 -2.3470 14 6 2.5883 -0.5214 -3.5558 15 7 3.8353 -0.6498 -3.9192 16 7 3.9025 -1.3475 -4.9973 17 6 2.7017 -1.7010 -5.3675 18 7 1.8330 -1.1817 -4.4666 19 6 0.3740 -1.3128 -4.4726 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 0.7089 1.1612 3.4844 24 1 1.4495 -1.4979 -1.4101 25 1 2.7588 1.0463 -2.1183 26 1 1.0869 0.6164 -2.5526 27 1 2.4476 -2.2950 -6.2328 28 1 -0.0628 -0.4870 -5.0342 29 1 0.0031 -1.2916 -3.4478 30 1 0.0960 -2.2575 -4.9401 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050417800.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:38 Heat of formation + Delta-G solvation = 81.830016 kcal Electronic energy + Delta-G solvation = -13694.133330 eV Core-core repulsion = 11333.139955 eV Total energy + Delta-G solvation = -2360.993375 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.87746 -36.34275 -34.85386 -32.86237 -30.84376 -28.39966 -27.58138 -25.32587 -24.60307 -22.17042 -20.58802 -20.33509 -17.13169 -16.30453 -16.22242 -15.21685 -14.84600 -14.38704 -13.97545 -13.45189 -13.25181 -12.94943 -12.45150 -11.84153 -11.66349 -11.29326 -10.98407 -10.85679 -10.61660 -10.24589 -10.13643 -10.07244 -9.98672 -9.13101 -8.98082 -8.41139 -7.42242 -6.03444 -4.06476 1.96798 2.59405 3.12795 3.30751 3.38844 3.45213 4.40967 4.50423 4.61610 4.66411 4.91695 5.16348 5.22691 5.28899 5.38484 5.77475 5.93230 6.16003 6.33820 6.53299 6.68551 6.92773 6.97777 7.19335 7.61676 7.81256 8.15037 8.35341 8.48581 8.98058 9.01093 9.59219 11.03812 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.051953 B = 0.007010 C = 0.006574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.821550 B = 3993.567245 C = 4258.086269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.039 0.961 4 C -0.495 4.495 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.672 5.672 13 C 0.143 3.857 14 C 0.197 3.803 15 N -0.283 5.283 16 N -0.302 5.302 17 C 0.135 3.865 18 N -0.480 5.480 19 C 0.073 3.927 20 H 0.092 0.908 21 H 0.004 0.996 22 H 0.028 0.972 23 H 0.260 0.740 24 H 0.323 0.677 25 H 0.102 0.898 26 H 0.038 0.962 27 H 0.214 0.786 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 -3.097 -12.762 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.534 4.534 5 H 0.083 0.917 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.303 5.303 13 C 0.011 3.989 14 C -0.071 4.071 15 N -0.123 5.123 16 N -0.142 5.142 17 C -0.152 4.152 18 N -0.172 5.172 19 C -0.071 4.071 20 H 0.111 0.889 21 H 0.023 0.977 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.140 0.860 25 H 0.120 0.880 26 H 0.056 0.944 27 H 0.230 0.770 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.947 -2.754 -12.453 13.090 hybrid contribution -2.272 -0.569 0.505 2.396 sum -5.219 -3.323 -11.948 13.455 Atomic orbital electron populations 1.22466 1.00537 0.99255 1.00708 1.19250 0.89614 0.94726 0.85928 0.94286 1.21166 1.30254 1.12593 0.89372 0.91730 1.24938 0.95253 0.95188 0.99089 1.69874 1.37337 1.23197 1.23393 0.86426 0.78512 0.79729 0.82670 1.19678 1.21016 1.21217 1.60826 1.58425 1.08554 1.02522 1.20321 0.98822 0.94704 0.85012 1.25195 0.88041 0.98918 0.94919 1.74292 1.15638 1.15390 1.07001 1.74241 1.19528 1.12381 1.08011 1.26312 0.86621 1.03833 0.98461 1.46255 1.09302 1.40251 1.21352 1.22087 0.75937 1.03824 1.05215 0.88894 0.97673 0.95268 0.93033 0.86043 0.87999 0.94388 0.76963 0.90106 0.88985 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 8.94 37.16 0.33 -3.46 16 2 C 0.21 5.11 2.57 -68.86 -0.18 4.94 16 3 H 0.04 1.03 7.80 -51.93 -0.40 0.62 16 4 C -0.50 -13.54 8.84 -34.44 -0.30 -13.84 16 5 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.14 11.32 55.43 0.63 -24.51 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.67 -13.97 6.22 -109.21 -0.68 -14.65 16 13 C 0.14 2.52 5.65 -4.98 -0.03 2.50 16 14 C 0.20 3.37 7.54 -154.99 -1.17 2.20 16 15 N -0.28 -5.62 12.21 32.79 0.40 -5.22 16 16 N -0.30 -5.38 12.21 29.69 0.36 -5.01 16 17 C 0.14 1.76 12.74 -89.94 -1.15 0.61 16 18 N -0.48 -6.25 3.15 -122.69 -0.39 -6.64 16 19 C 0.07 0.60 10.90 59.85 0.65 1.25 16 20 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 21 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 22 H 0.03 0.62 8.13 -51.93 -0.42 0.19 16 23 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.32 6.27 8.46 -39.29 -0.33 5.94 16 25 H 0.10 1.89 8.06 -51.93 -0.42 1.47 16 26 H 0.04 0.59 7.15 -51.93 -0.37 0.22 16 27 H 0.21 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.82 7.81 -51.93 -0.41 0.42 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 259.86 15.07 3.92 3.92 Total: -1.00 -32.28 259.86 -6.59 -38.87 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -3.87 Total: 1.24 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.94 Total: -4.38 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.32 Total: -56.04 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.28 -6.59 -38.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050417800.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.697 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds