Wall clock time and date at job start Sun Mar 29 2020 21:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47027 * 2 1 4 4 C 1.50699 * 109.47319 * 120.00609 * 2 1 3 5 5 H 1.07998 * 120.00400 * 119.99960 * 4 2 1 6 6 C 1.37879 * 119.99479 * 299.99553 * 4 2 1 7 7 N 1.31513 * 120.00406 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99709 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47128 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47312 * 120.00281 * 8 6 4 11 11 H 1.48511 * 109.46779 * 239.99848 * 8 6 4 12 12 N 1.46907 * 109.46669 * 240.00416 * 2 1 3 13 13 C 1.46897 * 111.00219 * 85.00074 * 12 2 1 14 14 C 1.50696 * 109.46976 * 179.97438 * 13 12 2 15 15 N 1.30517 * 126.34429 * 270.03676 * 14 13 12 16 16 N 1.28600 * 109.67250 * 179.97438 * 15 14 13 17 17 C 1.30526 * 109.67197 * 359.72320 * 16 15 14 18 18 N 1.35494 * 107.30545 * 0.43817 * 17 16 15 19 19 C 1.46499 * 126.97935 * 179.83284 * 18 17 16 20 20 H 1.09000 * 109.46485 * 299.99572 * 1 2 3 21 21 H 1.08994 * 109.47203 * 59.99571 * 1 2 3 22 22 H 1.09001 * 109.47027 * 180.02562 * 1 2 3 23 23 H 0.96999 * 120.00361 * 180.02562 * 7 6 4 24 24 H 1.00898 * 110.99855 * 321.04260 * 12 2 1 25 25 H 1.09001 * 109.47328 * 59.99309 * 13 12 2 26 26 H 1.09007 * 109.46871 * 299.99425 * 13 12 2 27 27 H 1.07996 * 126.34830 * 180.29376 * 17 16 15 28 28 H 1.09002 * 109.47391 * 269.68706 * 19 18 17 29 29 H 1.09001 * 109.46813 * 149.68762 * 19 18 17 30 30 H 1.09004 * 109.47041 * 29.68889 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.1475 -2.2865 3.6036 10 1 3.1474 -0.1860 4.8160 11 1 1.1679 -1.5868 4.8164 12 7 2.0196 -0.6925 -1.1996 13 6 2.0824 0.2227 -2.3470 14 6 2.5883 -0.5214 -3.5558 15 7 3.8353 -0.6498 -3.9192 16 7 3.9025 -1.3475 -4.9973 17 6 2.7017 -1.7010 -5.3675 18 7 1.8330 -1.1817 -4.4666 19 6 0.3740 -1.3128 -4.4726 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 0.7089 1.1612 3.4844 24 1 1.4495 -1.4979 -1.4101 25 1 2.7588 1.0463 -2.1183 26 1 1.0869 0.6164 -2.5526 27 1 2.4476 -2.2950 -6.2328 28 1 -0.0628 -0.4870 -5.0342 29 1 0.0031 -1.2916 -3.4478 30 1 0.0960 -2.2575 -4.9401 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050417800.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:38 Heat of formation + Delta-G solvation = 59.774581 kcal Electronic energy + Delta-G solvation = -13695.089725 eV Core-core repulsion = 11333.139955 eV Total energy + Delta-G solvation = -2361.949770 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.03393 -38.03569 -35.93814 -34.71169 -32.38758 -29.97378 -28.43267 -27.26389 -26.17836 -23.26374 -22.21646 -21.79965 -18.59203 -17.83006 -17.35571 -16.77770 -16.43386 -15.77256 -15.45228 -14.85837 -14.41926 -14.24460 -13.59833 -13.53778 -13.32449 -12.87277 -12.76561 -12.49914 -12.40769 -12.16831 -11.95096 -11.31558 -11.08095 -11.05986 -10.48883 -10.27832 -9.07374 -8.11002 -6.21220 0.85932 1.41424 1.44498 1.56118 1.64197 1.90656 2.44531 3.18025 3.29043 3.67150 3.81910 3.90891 4.07986 4.38531 4.48266 4.67571 4.69433 4.78879 4.88380 4.95517 5.05286 5.19622 5.38645 5.70075 5.79591 6.00354 6.24957 6.56441 6.69997 6.91322 7.48506 7.78964 8.94458 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.051953 B = 0.007010 C = 0.006574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.821550 B = 3993.567245 C = 4258.086269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.218 3.782 3 H 0.009 0.991 4 C -0.517 4.517 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.957 3.043 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.277 1.277 12 N -0.683 5.683 13 C 0.152 3.848 14 C 0.183 3.817 15 N -0.333 5.333 16 N -0.353 5.353 17 C 0.164 3.836 18 N -0.472 5.472 19 C 0.063 3.937 20 H 0.063 0.937 21 H 0.036 0.964 22 H 0.035 0.965 23 H 0.262 0.738 24 H 0.332 0.668 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.268 0.732 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.476 -4.204 -14.039 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.110 3.890 3 H 0.027 0.973 4 C -0.556 4.556 5 H 0.067 0.933 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.202 1.202 12 N -0.314 5.314 13 C 0.021 3.979 14 C -0.087 4.087 15 N -0.173 5.173 16 N -0.192 5.192 17 C -0.125 4.125 18 N -0.162 5.162 19 C -0.078 4.078 20 H 0.082 0.918 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.150 0.850 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.284 0.716 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.408 -3.866 -13.747 14.945 hybrid contribution -1.861 -0.250 0.791 2.038 sum -6.269 -4.116 -12.955 14.970 Atomic orbital electron populations 1.22230 0.98899 0.99642 1.00746 1.18984 0.90729 0.92881 0.86446 0.97268 1.21448 1.30462 1.12500 0.91207 0.93264 1.25622 0.95431 0.95856 1.01610 1.69981 1.37881 1.24022 1.24026 0.85526 0.78141 0.78553 0.79491 1.19854 1.20804 1.20223 1.60585 1.58692 1.09309 1.02839 1.20128 0.99708 0.93723 0.84345 1.24843 0.88161 1.00085 0.95603 1.74172 1.17641 1.16986 1.08514 1.74130 1.22410 1.14250 1.08422 1.27292 0.85202 1.01489 0.98477 1.46464 1.11070 1.38728 1.19978 1.22508 0.72817 1.06787 1.05669 0.91831 0.94526 0.94581 0.92878 0.85035 0.89934 0.91765 0.71623 0.87903 0.89697 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.80 8.94 71.98 0.64 -6.16 16 2 C 0.22 10.59 2.57 44.17 0.11 10.70 16 3 H 0.01 0.51 7.80 -2.39 -0.02 0.49 16 4 C -0.52 -28.66 8.84 25.60 0.23 -28.43 16 5 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -51.78 11.32 21.45 0.24 -51.54 16 8 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 N -0.68 -28.28 6.22 -499.44 -3.11 -31.39 16 13 C 0.15 5.31 5.65 85.56 0.48 5.80 16 14 C 0.18 6.09 7.54 137.98 1.04 7.13 16 15 N -0.33 -13.28 12.21 -50.16 -0.61 -13.89 16 16 N -0.35 -12.25 12.21 -59.99 -0.73 -12.99 16 17 C 0.16 3.75 12.74 180.11 2.30 6.04 16 18 N -0.47 -10.93 3.15 -542.07 -1.71 -12.64 16 19 C 0.06 0.77 10.90 127.77 1.39 2.16 16 20 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 21 H 0.04 1.32 7.45 -2.39 -0.02 1.31 16 22 H 0.04 1.48 8.13 -2.39 -0.02 1.46 16 23 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 24 H 0.33 12.57 8.46 -89.70 -0.76 11.81 16 25 H 0.08 3.16 8.06 -2.39 -0.02 3.15 16 26 H 0.06 1.88 7.15 -2.38 -0.02 1.87 16 27 H 0.27 2.69 8.06 -2.91 -0.02 2.66 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 1.22 7.81 -2.39 -0.02 1.20 16 30 H 0.13 0.68 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -71.94 259.86 3.14 -68.81 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.38 Total: 9.15 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 6.64 Total: -1.58 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -5.92 Total: -122.45 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -71.94 3.14 -68.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050417800.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.581 kcal (2) G-P(sol) polarization free energy of solvation -71.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds